PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0432s0150.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family TALE
Protein Properties Length: 677aa    MW: 74234.1 Da    PI: 6.1827
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0432s0150.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.23.1e-094174541954
                             HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                             Fe   ++yp+ +++  LA+++gLt +qV++WF N R +
  SapurV1A.0432s0150.1.p 417 FEHflHPYPKDSDKIMLARQTGLTRSQVSNWFINARVR 454
                             554459******************************88 PP
2BELL127.74.3e-41279350172
                    BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                             erqelq+k +kLls+l+eVd+r+kqy++q+q+v+ssF+++ g+gsakpYt+lAl++iSrhFrcL+dai++qi
  SapurV1A.0432s0150.1.p 279 ERQELQNKLTKLLSMLDEVDRRFKQYYHQMQIVVSSFDVISGCGSAKPYTALALQTISRHFRCLRDAITGQI 350
                             79*********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.4E-64203348IPR006563POX domain
PfamPF075264.0E-51209347IPR006563POX domain
PROSITE profilePS5007112.195395458IPR001356Homeobox domain
SMARTSM003898.3E-10398462IPR001356Homeobox domain
CDDcd000865.79E-13398459No hitNo description
SuperFamilySSF466893.94E-17399465IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-28401464IPR009057Homeodomain-like
PfamPF059204.6E-18415454IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 677 aa     Download sequence    Send to blast
MATYYTSSNN QRDGAAMVYL PGSYPDAPVL PGSMMMYMNS GSYPDNLAGN SHQQNNCIEF  60
QSVENSDSTP QQQEILSNLG GSRIGEHDFG AWRDGRNEML VVHSVNGVSS VLNGAQSLQG  120
QGLSLSLGTQ IQSGIQMPSI SYRNTNSGLT SFLSPNSSFT GDGGGRNGSS RDDQSINIEY  180
LTPGFIVGNH DVNKGDLSPY GMNSIARTIP NSKYLKVAQQ LLDEVVNVRR ALNQPDKEKN  240
QTTSEHGLNS AKDGDSESKN GASNLQESTN PPSELSHAER QELQNKLTKL LSMLDEVDRR  300
FKQYYHQMQI VVSSFDVISG CGSAKPYTAL ALQTISRHFR CLRDAITGQI HATRKSLGEQ  360
EASENLKGVG ITRLRYVDQH LRHQRALHQL GMMQQHAWRP QRGLPESSVS VLRAWLFEHF  420
LHPYPKDSDK IMLARQTGLT RSQVSNWFIN ARVRLWKPMV EEMYKEELGD AEMDSNSSSE  480
NAAKETKGDM GTSEDRVEEF QQSASSTATE RCTAGQLMDP KSDHVPDMKM AGSTTRSNFQ  540
NGTRGEAFTE YGLLKLREDQ RPSMDDCSLF SDAMVHSEGG GDRFIAAAAA AYQMSEVGRF  600
GNGSGVSLTL GLQHCEGGNL PMSGTTHHGF VSMRGDDDIY NAASSVGAGA TDFECLNPGN  660
RQHRFSSSHV FHDFVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A1e-16404461158Homeobox protein Meis1
4xrs_B1e-16404461158Homeobox protein Meis1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0432s0150.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0288611e-174CT028861.1 Poplar cDNA sequences.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024454646.10.0BEL1-like homeodomain protein 6
TrEMBLA0A2K2AVE80.0A0A2K2AVE8_POPTR; Uncharacterized protein
STRINGPOPTR_0004s16660.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21463179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16400.11e-143BEL1-like homeodomain 7