PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0430s0160.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family SBP
Protein Properties Length: 410aa    MW: 45368.2 Da    PI: 8.4838
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0430s0160.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.56.1e-41137214178
                             --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                     SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                             +Cqve+C+ dl++ak+yhrrh++Ce+hsk+p+v+v+g+e+rfCqqCsrfhelsefD++krsCrrrL++hn+rrr++q+
  SapurV1A.0430s0160.1.p 137 RCQVEECNLDLKSAKDYHRRHRICEKHSKSPKVIVAGMERRFCQQCSRFHELSEFDDKKRSCRRRLSDHNARRRRPQP 214
                             6**************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.106.0E-35131199IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.547135212IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.26E-38136217IPR004333Transcription factor, SBP-box
PfamPF031104.5E-32138211IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MDWNSTASEG KWENIVGLST KASDIPKQVP LVYHETEGDG AIDKGGIKTY STADGFPGVI  60
IRKDMTRVES TENTPSLGAS ASSGEPIIGL KLGKRMYFED ICSTSTAKSS SSSIVSTPCT  120
ATTKRSRASY PSTQSPRCQV EECNLDLKSA KDYHRRHRIC EKHSKSPKVI VAGMERRFCQ  180
QCSRFHELSE FDDKKRSCRR RLSDHNARRR RPQPEAIRFN SARPPPSSFY GCHFNFKDGR  240
QQMNVVLNIG CLSWQEIQLG KASAALKSLM LEIFLLGLQK QGPSIGSLAI PAMKCFEGSA  300
ITSNIEVAPD LRRALSLLST TSWGSNEHES TSLDQLMLAN QTSFTQPMIN AELQNCPVAS  360
SENARMEQPS LESRVHSLDL HDNGNVQLQE FQLLKAPYAT GCFYSNHFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-281382111184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1193210KKRSCRRRLSDHNARRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0430s0160.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006372254.10.0squamosa promoter-binding-like protein 12 isoform X1
RefseqXP_006372255.10.0squamosa promoter-binding-like protein 12 isoform X1
RefseqXP_024446068.10.0squamosa promoter-binding-like protein 12 isoform X1
RefseqXP_024446069.10.0squamosa promoter-binding-like protein 12 isoform X1
TrEMBLA0A2K1X1310.0A0A2K1X131_POPTR; Uncharacterized protein
TrEMBLA0A385JIS50.0A0A385JIS5_POPTO; Squamosa promoter binding protein-like 2
STRINGPOPTR_0018s14680.20.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46303058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.31e-53squamosa promoter binding protein-like 2