PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0429s0100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | G2-like | ||||||||
Protein Properties | Length: 316aa MW: 35230.8 Da PI: 9.0694 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 103.2 | 1.6e-32 | 67 | 120 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp LH++Fv+ave+LGG+++AtPk +l++m+vkgLt++hvkSHLQ+YR+ SapurV1A.0429s0100.1.p 67 PRLRWTPHLHHCFVHAVESLGGEDRATPKMVLQIMDVKGLTISHVKSHLQMYRS 120 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.944 | 63 | 123 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-31 | 63 | 122 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.94E-15 | 64 | 121 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.3E-23 | 67 | 121 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.7E-6 | 68 | 119 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MKKLEIESSV NKGPASSSPD HTGDDHAMKS SPDDIIRVTE RGVVGVSSRE INLKSATVRP 60 YVRSKTPRLR WTPHLHHCFV HAVESLGGED RATPKMVLQI MDVKGLTISH VKSHLQMYRS 120 MKHEQMIQEA AMEAKKNGKE PQMHPSNYLS HSMCYQQNRQ LNGKGLVNSN TLLHQALGVR 180 NPATGLALRN ASFPSQRKDK KGLWIGKKVK EPFLHEEEKT SKDWEQTPDN YIIFNDLLKS 240 FNGEETNDQE KMSAGATGCN ASNQSLEELD GIAERIDGDR MSLSQNSKVS ESFLRLRKAK 300 NSSDANDVSL ELTLA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 5e-19 | 68 | 123 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 5e-19 | 68 | 123 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 5e-19 | 68 | 123 | 3 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 5e-19 | 68 | 123 | 3 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 5e-19 | 68 | 123 | 3 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 5e-19 | 68 | 123 | 3 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 5e-19 | 68 | 123 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 5e-19 | 68 | 123 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 5e-19 | 68 | 123 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 5e-19 | 68 | 123 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 5e-19 | 68 | 123 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 5e-19 | 68 | 123 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0429s0100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC149575 | 1e-67 | AC149575.1 Populus trichocarpa clone Pop1-41G18, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006383901.2 | 1e-173 | myb family transcription factor PHL12 | ||||
TrEMBL | A0A3N7EVF1 | 1e-158 | A0A3N7EVF1_POPTR; Uncharacterized protein | ||||
STRING | cassava4.1_021436m | 1e-99 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9381 | 28 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02060.1 | 1e-32 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0429s0100.1.p |