PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0424s0240.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C2H2
Protein Properties Length: 462aa    MW: 50575.8 Da    PI: 9.3166
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0424s0240.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-052547123
                            EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                            ++C++C+k F r  nL+ H r H
  SapurV1A.0424s0240.2.p 25 FVCEICNKGFQRDQNLQLHRRGH 47
                            89*******************88 PP
2zf-C2H212.20.00055101123123
                             EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                             +kC +C+k +  +s+ k H +t+
  SapurV1A.0424s0240.2.p 101 WKCDKCSKKYAVQSDWKAHFKTC 123
                             58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.28E-72447No hitNo description
Gene3DG3DSA:3.30.160.601.5E-52447IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121717.2E-52547IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.9492547IPR007087Zinc finger, C2H2
SMARTSM003550.0172547IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002802747IPR007087Zinc finger, C2H2
SMARTSM00355606696IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.8E-589122IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.28E-796121No hitNo description
SMARTSM00355120101121IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MPGNPDPSAD VIALSPKTLM ATNRFVCEIC NKGFQRDQNL QLHRRGHNLP WKLKQRASGE  60
IRKRVYICPE PSCVHHNPAR ALGDLTGIKK HLYRKHGEKK WKCDKCSKKY AVQSDWKAHF  120
KTCGTKEYKC DCGTIFSRRD SFITHRAFCD ALTEENNKVI NQGLIPNMEQ NIQGQISSLI  180
PSMNINNNPN QSTMMSNLNH LDTKNSLSLP QALMQMPPKP SSGNMFSSST TSPFSGSRSM  240
SFNSSPALHL NANPSTIFQG NGHHNLAGSA SMSATALLQK AAQMGAAVSS NNVSSPMMQK  300
SFVTSMAPPT FGSIHTQNNQ SHVIGGDDGY VNQFFNSNGG VENSVLNEMG MFGAVLDQNN  360
ALFKAMEHAS SNNESVFQGA NSSSSLSSPT GGANPSRLSR FSGDMMTVDF LGIGGSRQRN  420
LHDQHNHQEM EFTRGISHPR MQGSNHFEQQ AGAIEKPLWD V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-3497159365Zinc finger protein JACKDAW
5b3h_F2e-3497159365Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0424s0240.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011036840.10.0PREDICTED: zinc finger protein NUTCRACKER-like
SwissprotQ9SCQ61e-108IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLB9H5860.0B9H586_POPTR; C2H2 family protein
STRINGPOPTR_0005s02730.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-94indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]