PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0424s0240.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C2H2
Protein Properties Length: 517aa    MW: 56127.8 Da    PI: 9.5863
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0424s0240.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.5e-0580102123
                             EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                             ++C++C+k F r  nL+ H r H
  SapurV1A.0424s0240.1.p  80 FVCEICNKGFQRDQNLQLHRRGH 102
                             89*******************88 PP
2zf-C2H2120.00063156178123
                             EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                             +kC +C+k +  +s+ k H +t+
  SapurV1A.0424s0240.1.p 156 WKCDKCSKKYAVQSDWKAHFKTC 178
                             58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.46E-779102No hitNo description
Gene3DG3DSA:3.30.160.601.7E-579102IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121718.3E-580102IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.94980102IPR007087Zinc finger, C2H2
SMARTSM003550.01780102IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028082102IPR007087Zinc finger, C2H2
SMARTSM0035560121151IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.4E-5144177IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.46E-7151176No hitNo description
SMARTSM00355120156176IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MSNTTGDGTG SFSSGGGGDE VHLNSLASTT VTAANSNGST VTQKLQQPPF KKKRNMPGNP  60
DPSADVIALS PKTLMATNRF VCEICNKGFQ RDQNLQLHRR GHNLPWKLKQ RASGEIRKRV  120
YICPEPSCVH HNPARALGDL TGIKKHLYRK HGEKKWKCDK CSKKYAVQSD WKAHFKTCGT  180
KEYKCDCGTI FSRRDSFITH RAFCDALTEE NNKVINQGLI PNMEQNIQGQ ISSLIPSMNI  240
NNNPNQSTMM SNLNHLDTKN SLSLPQALMQ MPPKPSSGNM FSSSTTSPFS GSRSMSFNSS  300
PALHLNANPS TIFQGNGHHN LAGSASMSAT ALLQKAAQMG AAVSSNNVSS PMMQKSFVTS  360
MAPPTFGSIH TQNNQSHVIG GDDGYVNQFF NSNGGVENSV LNEMGMFGAV LDQNNALFKA  420
MEHASSNNES VFQGANSSSS LSSPTGGANP SRLSRFSGDM MTVDFLGIGG SRQRNLHDQH  480
NHQEMEFTRG ISHPRMQGSN HFEQQAGAIE KPLWDV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C6e-34152214365Zinc finger protein JACKDAW
5b3h_F6e-34152214365Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0424s0240.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011036840.10.0PREDICTED: zinc finger protein NUTCRACKER-like
SwissprotQ9SCQ61e-112IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLB9H5860.0B9H586_POPTR; C2H2 family protein
STRINGPOPTR_0005s02730.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21923085
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-98C2H2 family protein
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]