PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0420s0040.5.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | C2H2 | ||||||||
Protein Properties | Length: 245aa MW: 28624.3 Da PI: 9.036 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15 | 7e-05 | 78 | 101 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 +kC++C+ksF+ +L +H + H SapurV1A.0420s0040.5.p 78 WKCGYCKKSFRAEKYLDQHFDNrH 101 58*****************77666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 8.642 | 78 | 101 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 80 | 101 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MFVMMLVFRT VKQEEEHGHK VHCSRERSRA AWQAIEEYLM PFVERERYQI LSKCRLHPSN 60 DLFRDQEEHK IHVDINEWKC GYCKKSFRAE KYLDQHFDNR HYNLLNISDS KCLADLCGAL 120 HCDFMMDSKS TKTKCNPAAV AKNRHLCESL ADSCFPLSQG PSASRLHELF LHQFCDAHTC 180 SGKRKLFPKG GKKETSVFYL AISILTMMMI PLFYLIVYLH QSEMRKGTQE LRRIPKVGRK 240 TKPM* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0420s0040.5.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011024088.1 | 1e-168 | PREDICTED: uncharacterized protein LOC105125376 | ||||
Refseq | XP_011024089.1 | 1e-168 | PREDICTED: uncharacterized protein LOC105125376 | ||||
TrEMBL | B9IF52 | 1e-164 | B9IF52_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0015s10200.1 | 1e-165 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63280.1 | 1e-125 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0420s0040.5.p |