PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0420s0040.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | C2H2 | ||||||||
Protein Properties | Length: 269aa MW: 31044.1 Da PI: 9.1615 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.9 | 7.9e-05 | 102 | 125 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 +kC++C+ksF+ +L +H + H SapurV1A.0420s0040.1.p 102 WKCGYCKKSFRAEKYLDQHFDNrH 125 58*****************77666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 8.642 | 102 | 125 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 104 | 125 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MGKASKITLI LLLVSLLFKQ ILSQDVGEHV AARTVKQEEE HGHKVHCSRE RSRAAWQAIE 60 EYLMPFVERE RYQILSKCRL HPSNDLFRDQ EEHKIHVDIN EWKCGYCKKS FRAEKYLDQH 120 FDNRHYNLLN ISDSKCLADL CGALHCDFMM DSKSTKTKCN PAAVAKNRHL CESLADSCFP 180 LSQGPSASRL HELFLHQFCD AHTCSGKRKL FPKGGKKETS VFYLAISILT MMMIPLFYLI 240 VYLHQSEMRK GTQELRRIPK VGRKTKPM* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0420s0040.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011024088.1 | 0.0 | PREDICTED: uncharacterized protein LOC105125376 | ||||
Refseq | XP_011024089.1 | 0.0 | PREDICTED: uncharacterized protein LOC105125376 | ||||
TrEMBL | B9IF52 | 0.0 | B9IF52_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0015s10200.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3216 | 13 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63280.1 | 1e-126 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0420s0040.1.p |