PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0418s0010.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | C2H2 | ||||||||
Protein Properties | Length: 504aa MW: 53184 Da PI: 8.5766 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.2 | 1.4e-05 | 71 | 93 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H SapurV1A.0418s0010.1.p 71 FVCEICNKGFQRDQNLQLHRRGH 93 89*******************88 PP | |||||||
2 | zf-C2H2 | 14 | 0.00015 | 147 | 169 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+k + +s+ k H++t+ SapurV1A.0418s0010.1.p 147 WKCERCSKKYAVQSDWKAHLKTC 169 58*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.7E-5 | 70 | 93 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 5.69E-7 | 70 | 93 | No hit | No description |
Pfam | PF12171 | 8.0E-5 | 71 | 93 | IPR022755 | Zinc finger, double-stranded RNA binding |
SMART | SM00355 | 0.017 | 71 | 93 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.949 | 71 | 93 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 73 | 93 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 83 | 112 | 142 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 4.8E-5 | 135 | 168 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 5.69E-7 | 142 | 167 | No hit | No description |
SMART | SM00355 | 130 | 147 | 167 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 504 aa Download sequence Send to blast |
MVGGENSSRM TVSTASGEDA ISSVSSFDNQ GIPHSITVPI PKKKRNLPGM PDPDAEVVAL 60 SPKTLLATNR FVCEICNKGF QRDQNLQLHR RGHNLPWKLK QRTNKEPRKR VYVCPESSCV 120 HHNPARALGD LTGIKKHFYR KHGEKKWKCE RCSKKYAVQS DWKAHLKTCG TKEYKCDCGT 180 LFSRRDSFIT HRAFCDALAE ESARAQTLAI MGKEGNGCDV RRVVASPSPP PLTPSTSVVS 240 PGLSVQSSEL AENPFGLSPP PTACATATST SSTSSTSNVF AATFASSTAE PAAIPQEASV 300 PSSFPHLFCG LARSDCPPTM PAPRAIESPS LSLSPSLYLS NNTSSLFTTE QDHYHYTPSP 360 QPAMSATALL QKAAQMGATT SNPSFLLGLG LPPSTNQDNN CNKWVVEPEN NTTVAAGLGL 420 GLPSSDVMMG SSSLFGNKPT TLDLLGLGMA AASSAMLNPY SGGFNVGAAA VAAATAAAYG 480 GGGKETWDGV PERKPYGSTG ASL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 4e-36 | 143 | 209 | 3 | 69 | Zinc finger protein JACKDAW |
5b3h_F | 4e-36 | 143 | 209 | 3 | 69 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0418s0010.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006386940.1 | 0.0 | protein indeterminate-domain 2 | ||||
Swissprot | Q9LVQ7 | 1e-138 | IDD1_ARATH; Zinc finger protein ENHYDROUS | ||||
TrEMBL | U5GU12 | 0.0 | U5GU12_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s26430.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2218 | 32 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50700.1 | 1e-113 | indeterminate(ID)-domain 2 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0418s0010.1.p |
Publications ? help Back to Top | |||
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