PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0406s0070.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | C2H2 | ||||||||
Protein Properties | Length: 269aa MW: 29079.9 Da PI: 4.535 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.5 | 0.00021 | 242 | 265 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+ C ksF + Lk+H + H SapurV1A.0406s0070.1.p 242 FSCKSCEKSFGTDGALKSHSQAkH 265 89*****************76655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03066 | 1.6E-8 | 6 | 154 | No hit | No description |
PROSITE profile | PS50157 | 11.011 | 242 | 268 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 244 | 265 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009294 | Biological Process | DNA mediated transformation | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0010162 | Biological Process | seed dormancy process | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MSSMEFWGVE VKAGEPLKVE PKDFCMIHLS QAALGESKKG RESVPLFVKV NEKKIVLGTL 60 SPENIPQLSF DLVFETEFEL SHNWKNGSVF FCGYQVIPDD DASEFSSDEE DFEFAKAAIA 120 KDKAAKPEKT KATLVEPSKD DDEDDSDEDD ESEEGMSLDE DLDDSDDESD SEDEETPKKA 180 ETSKKRANES ATKTPVSSKK AKAATPQKSD VKKPGQVTPH PSKGKAAANG NSSKSPKSGG 240 NFSCKSCEKS FGTDGALKSH SQAKHAAK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Mediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0406s0070.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By fertilization. {ECO:0000269|PubMed:15082924}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF144730 | 0.0 | EF144730.1 Populus trichocarpa clone WS01117_I04 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011044413.1 | 1e-138 | PREDICTED: histone deacetylase HDT1-like | ||||
Swissprot | Q6V9I6 | 5e-63 | HDT1_SOLCH; Histone deacetylase HDT1 | ||||
TrEMBL | A9P996 | 1e-134 | A9P996_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0009s15160.1 | 1e-136 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1025 | 30 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G44750.2 | 4e-35 | histone deacetylase 3 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0406s0070.1.p |
Publications ? help Back to Top | |||
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