PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0403s0250.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C2H2
Protein Properties Length: 346aa    MW: 38130.4 Da    PI: 6.8241
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0403s0250.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.33.4e-07137158223
                             EETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                              C +Cgk F+r  nL+ H+r H
  SapurV1A.0403s0250.1.p 137 FCDICGKGFKRDANLRMHMRAH 158
                             6*******************99 PP
2zf-C2H213.70.00018226249123
                             EEETTTT.EEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                             y+C+ C+ ksFs   +Lk+H++++
  SapurV1A.0403s0250.1.p 226 YSCNRCNnKSFSVVADLKSHLKNC 249
                             99*******************998 PP
3zf-C2H211.70.00079258273621
                             TTEEESSHHHHHHHHH CS
                 zf-C2H2   6 CgksFsrksnLkrHir 21 
                             Cg+sFsrk+ L  H+ 
  SapurV1A.0403s0250.1.p 258 CGTSFSRKDKLFGHMA 273
                             **************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.99E-6133160No hitNo description
SMARTSM003550.0017136158IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.341136163IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.1E-6136160IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF128740.0044137156No hitNo description
PROSITE patternPS000280138158IPR007087Zinc finger, C2H2
SMARTSM0035579226247IPR015880Zinc finger, C2H2-like
SMARTSM00355210254278IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MSYPGESIRD PKGYSFPVIS NTDPRVPLLN LSTVCTRMDS LQQFLSESVN NNTLIRKDQM  60
DMVSSEISSA IHQTIVNAAA LLSCSSSSSQ PVMPLPPVES TAIKKGEVLR VENREANDDT  120
EAIELDAVEL LAEHVHFCDI CGKGFKRDAN LRMHMRAHGN EFKTLEALAR PDKGDKTSSA  180
SLAGKTKFSC PFEGCNRNKK HSKFKPLKSV ICVRNNFKRS HCPKMYSCNR CNNKSFSVVA  240
DLKSHLKNCG ESRWKCSCGT SFSRKDKLFG HMALFEGHMP AVVGEVAGSK AKGLVVGGPV  300
AMEEDEEEES VIKGDDLVDN EFFEGFLNGF GSMEEYNLQD IWGLI*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.
UniProtProbable transcription factor. Together with STOP2, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:17535918, ECO:0000269|PubMed:18826429, ECO:0000269|PubMed:19321711, ECO:0000269|PubMed:23935008}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0403s0250.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By shock H(+) and Al(3+) treatments. {ECO:0000269|PubMed:17535918}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002310559.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 1
SwissprotQ943I64e-73STOP1_ORYSJ; Zinc finger protein STOP1 homolog
SwissprotQ9C8N52e-73STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1
TrEMBLB9HFF70.0B9HFF7_POPTR; Uncharacterized protein
STRINGPOPTR_0007s05340.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68553150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.33e-74C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Kobayashi Y, et al.
    Molecular and physiological analysis of Al³⁺ and H⁺ rhizotoxicities at moderately acidic conditions.
    Plant Physiol., 2013. 163(1): p. 180-92
    [PMID:23839867]
  3. Yokosho K,Yamaji N,Ma JF
    Global transcriptome analysis of Al-induced genes in an Al-accumulating species, common buckwheat (Fagopyrum esculentum Moench).
    Plant Cell Physiol., 2014. 55(12): p. 2077-91
    [PMID:25273892]
  4. Geng X, et al.
    LEUNIG_HOMOLOG transcriptional co-repressor mediates aluminium sensitivity through PECTIN METHYLESTERASE46-modulated root cell wall pectin methylesterification in Arabidopsis.
    Plant J., 2017. 90(3): p. 491-504
    [PMID:28181322]
  5. Balzergue C, et al.
    Low phosphate activates STOP1-ALMT1 to rapidly inhibit root cell elongation.
    Nat Commun, 2017. 8: p. 15300
    [PMID:28504266]
  6. Pelagio-Flores R,Esparza-Reynoso S,Garnica-Vergara A,López-Bucio J,Herrera-Estrella A
    Trichoderma-Induced Acidification Is an Early Trigger for Changes in Arabidopsis Root Growth and Determines Fungal Phytostimulation.
    Front Plant Sci, 2017. 8: p. 822
    [PMID:28567051]
  7. Jiang F, et al.
    Identification and characterization of suppressor mutants of stop1.
    BMC Plant Biol., 2017. 17(1): p. 128
    [PMID:28738784]
  8. Daspute AA, et al.
    Transcriptional Regulation of Aluminum-Tolerance Genes in Higher Plants: Clarifying the Underlying Molecular Mechanisms.
    Front Plant Sci, 2017. 8: p. 1358
    [PMID:28848571]
  9. Sharma A,Wai CM,Ming R,Yu Q
    Diurnal Cycling Transcription Factors of Pineapple Revealed by Genome-Wide Annotation and Global Transcriptomic Analysis.
    Genome Biol Evol, 2017. 9(9): p. 2170-2190
    [PMID:28922793]
  10. Zhang Y, et al.
    The Cell Cycle Checkpoint Regulator ATR Is Required for Internal Aluminum Toxicity-Mediated Root Growth Inhibition in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 118
    [PMID:29491872]