PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0402s0050.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family HD-ZIP
Protein Properties Length: 761aa    MW: 83342.3 Da    PI: 5.6221
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0402s0050.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.14.2e-2091146156
                             TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                             +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  q+k+WFqN+R+++k
  SapurV1A.0402s0050.2.p  91 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQIKFWFQNKRTQMK 146
                             688999***********************************************999 PP
2START208.23.2e-652805001206
                             HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S. CS
                   START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla. 77 
                             ela +a++el+++a+ +ep+W+       + +n+ e++++f+ + +     ++ ea+r+s+vv+m++ +lve l+d++ qW++ +  
  SapurV1A.0402s0050.2.p 280 ELAVAAMEELIRMAQMDEPLWMNNLdgidSVLNEVEYTRIFPHGLGpkpagFKCEASRESAVVIMNHINLVEYLMDVN-QWSTLFSg 365
                             57899********************999999**********888779*******************************.******** PP

                             ...EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEE CS
                   START  78 ...kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgili 154
                                +a tlev+s+g      galq+m+ae+q+++plvp R++++vRy++q+ +g+w++vdvS+d+ ++ p+     R++++pSg+li
  SapurV1A.0402s0050.2.p 366 ivsRALTLEVLSTGvagnynGALQVMTAEFQLPTPLVPtRESYYVRYCKQHADGTWAVVDVSLDNIRPSPT----PRCRRRPSGCLI 448
                             ********************************************************************995....89999******* PP

                             EEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                   START 155 epksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                             ++++ng+skvtwve+v++++r +h+l+++lv+sg+a+gak+wvatl+rqce+
  SapurV1A.0402s0050.2.p 449 QEMPNGYSKVTWVENVEVDDRGVHNLYKQLVSSGHAFGAKRWVATLDRQCER 500
                             **************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.7E-2269146IPR009057Homeodomain-like
SuperFamilySSF466892.38E-1978148IPR009057Homeodomain-like
PROSITE profilePS5007116.8688148IPR001356Homeobox domain
SMARTSM003897.5E-2089152IPR001356Homeobox domain
PfamPF000461.1E-1791146IPR001356Homeobox domain
CDDcd000863.00E-1991149No hitNo description
PROSITE patternPS000270123146IPR017970Homeobox, conserved site
SuperFamilySSF559614.53E-35271502No hitNo description
PROSITE profilePS5084843.348271503IPR002913START domain
CDDcd088753.38E-125275499No hitNo description
SMARTSM002344.4E-62280500IPR002913START domain
PfamPF018524.2E-55281500IPR002913START domain
Gene3DG3DSA:3.30.530.206.2E-6376482IPR023393START-like domain
SuperFamilySSF559611.51E-23519752No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 761 aa     Download sequence    Send to blast
MPAGVMIPTR NMPSMIGVNG NVGGSGSSSG LALGQGNMME GQFHHLDMAH NTFEGDMTRI  60
RDEEFDSTNT KSGSENQEGG SGDEQDPRPK KKRYHRHTQH QIQEMEAFFK ECPHPDDKQR  120
KELSRELGLE PLQIKFWFQN KRTQMKTQHE RHENTQLRNE NEKLRADNMR YREALSNASC  180
PNCGGPTAIG EMSFDEHHLR LENTRLREEI DRISAIAARY VGKPVLNYPV ISPPMPPRPV  240
DLGVGNFGGQ PVLGGEIYEA GDLLRSISAP TEADKPMIIE LAVAAMEELI RMAQMDEPLW  300
MNNLDGIDSV LNEVEYTRIF PHGLGPKPAG FKCEASRESA VVIMNHINLV EYLMDVNQWS  360
TLFSGIVSRA LTLEVLSTGV AGNYNGALQV MTAEFQLPTP LVPTRESYYV RYCKQHADGT  420
WAVVDVSLDN IRPSPTPRCR RRPSGCLIQE MPNGYSKVTW VENVEVDDRG VHNLYKQLVS  480
SGHAFGAKRW VATLDRQCER LASAMATNIP AGDAGVITNQ EGRKSMMKLA ERMAISFCAG  540
VSASTAHTWT TLSGTGADDV RVMTRKSVDD PGRPPGIVLS AATSFWLPVP PKRVFDFLRD  600
ENTRNEWDIL SNGGVVQEMA HIANGRDTGN CVSLIRVNSA NSSQSNMLIL QESCTDQTAS  660
FVIYAPVDIV AMNVVLNGGD PDYVALLPSG FAIFPDGTAA HGVGMDEYGS TGGSLLTVAF  720
QILVDSVPTA KLSLGSVATV NNLIACTVER IKASLSCESA *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0402s0050.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2166771e-115AC216677.1 Populus trichocarpa clone POP103-G02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002302880.20.0homeobox-leucine zipper protein HDG2 isoform X2
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLA0A3N7G4B80.0A0A3N7G4B8_POPTR; Uncharacterized protein
STRINGPOPTR_0002s23080.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2