PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0400s0250.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 210aa MW: 23960.5 Da PI: 8.7114 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 86.7 | 1.3e-27 | 9 | 55 | 1 | 47 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 krien + rqvtfskR+ng+lKKA+ELS+LCdaevaviifs++g+l+ SapurV1A.0400s0250.1.p 9 KRIENATSRQVTFSKRKNGLLKKAYELSILCDAEVAVIIFSQKGTLF 55 79******************************************996 PP | |||||||
2 | K-box | 72 | 1.8e-24 | 81 | 170 | 9 | 98 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 e+ e+l++e+a++ k+ie L++ qR+llG+dL+s+s keL+ + +qLe sl++iR++K++l+ eqie+lq+ke l en +L+ SapurV1A.0400s0250.1.p 81 DVEQYKEQLRHESANMAKKIEILETLQRKLLGQDLDSCSPKELKDIGNQLEISLSNIRARKTQLFEEQIEQLQEKETLLLMENARLS 167 45677889******************************************************************************9 PP K-box 96 kkl 98 k+ SapurV1A.0400s0250.1.p 168 KQC 170 985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 28.553 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.4E-36 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.47E-34 | 3 | 71 | No hit | No description |
PRINTS | PR00404 | 5.8E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 8.63E-27 | 3 | 73 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.3E-25 | 10 | 55 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.8E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.8E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.2E-23 | 85 | 170 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.993 | 86 | 176 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MVRGKVQLKR IENATSRQVT FSKRKNGLLK KAYELSILCD AEVAVIIFSQ KGTLFASADQ 60 IQKTIDRYRE NAKQVHTDRI DVEQYKEQLR HESANMAKKI EILETLQRKL LGQDLDSCSP 120 KELKDIGNQL EISLSNIRAR KTQLFEEQIE QLQEKETLLL MENARLSKQC GAQPLQQSNQ 180 VVSYLSSCSK NSDIVETDLY IGLPQMRCL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 4e-17 | 1 | 109 | 1 | 91 | MEF2 CHIMERA |
6byy_B | 4e-17 | 1 | 109 | 1 | 91 | MEF2 CHIMERA |
6byy_C | 4e-17 | 1 | 109 | 1 | 91 | MEF2 CHIMERA |
6byy_D | 4e-17 | 1 | 109 | 1 | 91 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | MADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269|PubMed:21609362, ECO:0000269|PubMed:21689171}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0400s0250.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002318261.1 | 1e-131 | MADS-box protein AGL42 | ||||
Refseq | XP_024437836.1 | 1e-131 | MADS-box protein AGL42 | ||||
Swissprot | Q9FIS1 | 1e-63 | AGL42_ARATH; MADS-box protein AGL42 | ||||
TrEMBL | B9I4G5 | 1e-130 | B9I4G5_POPTR; Uncharacterized protein | ||||
STRING | XP_004308127.1 | 4e-81 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF666 | 30 | 102 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62165.3 | 2e-55 | AGAMOUS-like 42 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0400s0250.1.p |