PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0400s0190.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ARR-B
Protein Properties Length: 620aa    MW: 67355.6 Da    PI: 7.3428
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0400s0190.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like772.5e-24199252155
                 G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                             k++l Wt+ LH+rF++a++++ G +kA+Pk+ile+m+v gL++eh++SHLQkYR+
  SapurV1A.0400s0190.1.p 199 KQKLIWTNALHNRFLQAIHHI-GLDKAVPKRILECMSVRGLAREHIASHLQKYRI 252
                             799******************.********************************6 PP
2Response_reg65.91.9e-22161311108
                             EEEESSSHHHHHHHHHHHH......HTTCE.EEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEE CS
            Response_reg   1 vlivdDeplvrellrqale......kegye.evaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvt 78 
                             +livdD+ + ++++ ++l+      ++++e  v + +++ +al +l+ k+  +Dl+++D+ mp+m+G+el k+ +ee  +lp+i+++
  SapurV1A.0400s0190.1.p  16 ILIVDDDSTTLSVVSSMLKafscrdNHKLElLVVTIKNPLDALSTLQSKNyvFDLVITDLHMPQMNGMELKKHVHEEF-NLPVIIMS 101
                             8*****************98877653444315779***********999999************************99.******** PP

                             STTTHHHHHHHHHTTESEEEESS--HHHHH CS
            Response_reg  79 ahgeeedalealkaGakdflsKpfdpeelv 108
                             + ++e+ +l+ l+ Ga  +++Kp++++++ 
  SapurV1A.0400s0190.1.p 102 SDDSENVILRSLEGGAAFYIVKPVNKDDIK 131
                             **************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.3E-307138No hitNo description
SMARTSM004487.7E-2114134IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521727.68E-2714139IPR011006CheY-like superfamily
PROSITE profilePS5011035.68915138IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.1E-1916132IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.08E-2117137No hitNo description
Gene3DG3DSA:1.10.10.602.1E-24197256IPR009057Homeodomain-like
SuperFamilySSF466891.18E-16197256IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-24199252IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 620 aa     Download sequence    Send to blast
MASNQSSDSS LFRIQILIVD DDSTTLSVVS SMLKAFSCRD NHKLELLVVT IKNPLDALST  60
LQSKNYVFDL VITDLHMPQM NGMELKKHVH EEFNLPVIIM SSDDSENVIL RSLEGGAAFY  120
IVKPVNKDDI KSVWRYAVAT KAGKSLSIKE IGGSGEPFSI NEDVNSAINN EIRKYGTKEG  180
RQSTEEDKEV EIHQPATKKQ KLIWTNALHN RFLQAIHHIG LDKAVPKRIL ECMSVRGLAR  240
EHIASHLQKY RIFLRKVAER GGISSRRLSG RALGSNLAPF SMLKNVQREY SPVTRASVQP  300
GLGGSTIPAL GGSSFRGLLS PNQQAPSNNY LFRSPHSQSL LFGTANSANG AGANLPSYGG  360
VPHGTSPMQM YQPQNQARSY LQNFGSPLLN RVGAVGIDQA ANYRSGVGDI GITNNSLNTN  420
NNYAGIRVTT DGHLIRSGQM QLNNNGLSNG FSNGGHPGWM NWASNGNMNA ACMGFNIASP  480
SYMDQRGSFS SGFVGANQFF PPPPFTSVYD GNTPMLPPPS QHQLGLGYGG QNDFVFGLTN  540
SSPSILLGES SNQQPQIGQG ELNVSDMVLE PPNNPPAYQL PQGVDEISTH LHELLTPDFL  600
NSLHIDDSTP WNEQPLSQA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A4e-19196258264ARR10-B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0400s0190.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002318255.30.0putative two-component response regulator ARR21
TrEMBLA0A2K1YD360.0A0A2K1YD36_POPTR; Uncharacterized protein
STRINGPOPTR_0012s13900.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101422534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07210.11e-48response regulator 21