PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0396s0190.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | SRS | ||||||||
Protein Properties | Length: 346aa MW: 36803.7 Da PI: 7.9617 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 223 | 6.1e-69 | 116 | 265 | 3 | 154 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsst 89 g++sCqdCGnqakkdC h+RCRtCCksrgf+C+thvkstWvpa+krrerq+ql+a +++++++ + ++ kr+ ++ ++s+l++t SapurV1A.0396s0190.1.p 116 GGSISCQDCGNQAKKDCLHMRCRTCCKSRGFECQTHVKSTWVPASKRRERQHQLTAFQQQQQQQLQIRGENPKRQRENPSSSSLACT 202 5789****************************************************9999988885555555555555788888999 PP DUF702 90 klssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +l+++ + le ++P+evss+a+frcvrv+ +d++ee laYqtav+igGhvfkGiLyd+G+e+ SapurV1A.0396s0190.1.p 203 RLANNM--SGLELGNFPAEVSSPALFRCVRVGDIDESEEMLAYQTAVNIGGHVFKGILYDHGPES 265 887775..5689999************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 4.6E-66 | 118 | 264 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 6.0E-28 | 120 | 162 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 1.9E-23 | 216 | 263 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010051 | Biological Process | xylem and phloem pattern formation | ||||
GO:0010252 | Biological Process | auxin homeostasis | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048479 | Biological Process | style development | ||||
GO:0048480 | Biological Process | stigma development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MAGLFSLGRG RSSSSGGNNQ EQQNNNPTAE IPQENWFPYR SEDISYKGFE PWQQQQHQEL 60 IHQRHQNPQQ DLYSSAVGLG VGPSRASINI SEESSSRSAA AAAAFMMMRP VGSGGGGSIS 120 CQDCGNQAKK DCLHMRCRTC CKSRGFECQT HVKSTWVPAS KRRERQHQLT AFQQQQQQQL 180 QIRGENPKRQ RENPSSSSLA CTRLANNMSG LELGNFPAEV SSPALFRCVR VGDIDESEEM 240 LAYQTAVNIG GHVFKGILYD HGPESNYMAP GETSSGGGGG GGGGGRSLNL ITAGTAATSA 300 SVSATGGGGV TVASTTAAFL DPSSLYPAPL NTFMAGTQFF PNPRS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619, ECO:0000269|PubMed:20154152, ECO:0000269|PubMed:22318676}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00613 | PBM | Transfer from AT3G51060 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0396s0190.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269|PubMed:21976484}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 7e-35 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. | |||
GenBank | HG975514 | 7e-35 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. | |||
GenBank | KC331910 | 7e-35 | KC331910.1 Solanum lycopersicum expression of terpenoids 1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011028610.1 | 1e-175 | PREDICTED: protein SHI RELATED SEQUENCE 1-like | ||||
Swissprot | Q9SD40 | 1e-101 | SRS1_ARATH; Protein SHI RELATED SEQUENCE 1 | ||||
TrEMBL | B9MXK1 | 1e-159 | B9MXK1_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s12020.1 | 1e-160 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF882 | 34 | 125 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G51060.1 | 3e-76 | Lateral root primordium (LRP) protein-related |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0396s0190.1.p |
Publications ? help Back to Top | |||
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