PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0395s0230.6.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family WRKY
Protein Properties Length: 726aa    MW: 77923.8 Da    PI: 5.8457
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0395s0230.6.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.62.3e-32305362260
                             --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                    WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                             dDgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers  +++++ei+Y+g+H h+k
  SapurV1A.0395s0230.6.p 305 DDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSL-EGHITEIIYKGTHSHPK 362
                             8****************************************.***************85 PP
2WRKY103.71e-32516574159
                             ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                    WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                             ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+ver+++d k v++tYeg+Hnh+
  SapurV1A.0395s0230.6.p 516 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCTVRKHVERASHDLKSVITTYEGKHNHD 574
                             59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-28302363IPR003657WRKY domain
SuperFamilySSF1182901.05E-25302363IPR003657WRKY domain
SMARTSM007748.8E-36304362IPR003657WRKY domain
PROSITE profilePS5081122.687305363IPR003657WRKY domain
PfamPF031065.1E-25305361IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.4E-37501576IPR003657WRKY domain
SuperFamilySSF1182901.57E-28508576IPR003657WRKY domain
PROSITE profilePS5081138.664511576IPR003657WRKY domain
SMARTSM007741.5E-37516575IPR003657WRKY domain
PfamPF031066.5E-25517574IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 726 aa     Download sequence    Send to blast
MAGIDDNVAI IGDWVPPSPS PRAFFSAMLG DDINSRTITE PPGENRNEGL LLGQPEQMTT  60
GNAEKKDGAR SSGAQLIESG SFSEQKSNSR GGLVERMAAR AGFNAPRLNT ESIRSAETSL  120
NSEIRSPYLT IPPGLSPTTL LESPVFLSNL AQPSPTTGKF SFFPNGSSKS STVGSELPDK  180
SKETFFEDIN SSSFAFKPLG ESGSSFFLGG TSKQSFPGID VSVHSEDALQ SNDVEPSKVQ  240
SDSRNSLHFP AEFLGNTLAD QKTFDTVGGN AEHSSPLDEQ QDEEGDQRAT GDSMVAGGTG  300
GTPSDDGYNW RKYGQKQVKG SEYPRSYYKC THPNCPVKKK VERSLEGHIT EIIYKGTHSH  360
PKPPPNRRSA IGSLDTQLDI PEPAGPQIGS VNDSSWAGTH KGTVAGTSDW RRDNVEVTSS  420
ASGGPGPEFG NPSSSVQAQS GTPFESADAI DASSTFSNDE DDDRATHGSV GYDGEGEESE  480
SKRRKIETYA TEMSGATRAI REPRVVVQTT SEVDILDDGY RWRKYGQKVV KGNPNPRSYY  540
KCTSAGCTVR KHVERASHDL KSVITTYEGK HNHDVPAARN SSHVNSGTST APPGQAAISA  600
QNHVHRPEPS QVHNSMARFD RPPAFGSFSL PGRQQLGPSP GFSFGMNQPG LANLAMAGLG  660
PGQPKMPMMP IHPYLAQQRP GNEMGFMMPK EEPKVEPVTE PSLNLSNNPT LYQQIMSRLP  720
LGPQM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-36305577878Probable WRKY transcription factor 4
2lex_A1e-36305577878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0395s0230.6.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011007030.10.0PREDICTED: probable WRKY transcription factor 2 isoform X2
SwissprotQ9FG770.0WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLA0A1X9IXI90.0A0A1X9IXI9_POPTO; Uncharacterized protein
STRINGPOPTR_0001s47670.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.10.0WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  4. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]