PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0391s0180.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C2H2
Protein Properties Length: 371aa    MW: 43145.3 Da    PI: 8.7751
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0391s0180.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.56e-076889223
                            EETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                            +C++Cg sF+ + +L++H+++H
  SapurV1A.0391s0180.1.p 68 TCEKCGASFKKPAYLVQHMQSH 89
                            6*******************99 PP
2zf-C2H2130.0003195119123
                             EEET..TTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                             ++C+  dC+ s++rk++L+rH+  H
  SapurV1A.0391s0180.1.p  95 FRCSvdDCHASYRRKDHLTRHLFHH 119
                             89*******************9776 PP
3zf-C2H221.37e-07124149123
                             EEET..TTTEEESSHHHHHHHHHH.T CS
                 zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                             +kC+  +C++ F  +snLkrH r  H
  SapurV1A.0391s0180.1.p 124 FKCEleNCDRKFVYPSNLKRHVRElH 149
                             89*********************988 PP
4zf-C2H220.71.1e-06164188123
                             EEET..TTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                             y+C+   Cgk F+ +s L++H  +H
  SapurV1A.0391s0180.1.p 164 YVCQelGCGKAFRYPSKLQKHVDSH 188
                             99*******************9988 PP
5zf-C2H214.79e-05256280223
                             EET..TTTEEESSHHHHHHHHHH.T CS
                 zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                             kC+   C  +Fs+k nL++H +  H
  SapurV1A.0391s0180.1.p 256 KCHfkGCQHTFSTKTNLNQHVKAvH 280
                             7*******************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.8712350IPR007087Zinc finger, C2H2
SMARTSM00355242345IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.2E-66788IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0076789IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.0696794IPR007087Zinc finger, C2H2
PROSITE patternPS0002806989IPR007087Zinc finger, C2H2
SuperFamilySSF576673.97E-1075127No hitNo description
Gene3DG3DSA:3.30.160.608.6E-1089121IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.1795119IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.6495124IPR007087Zinc finger, C2H2
PROSITE patternPS00028097119IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.7E-7122150IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.21E-8122188No hitNo description
SMARTSM003550.002124149IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.799124154IPR007087Zinc finger, C2H2
PROSITE patternPS000280126149IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.6E-8160188IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0012164188IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.385164193IPR007087Zinc finger, C2H2
PROSITE patternPS000280166188IPR007087Zinc finger, C2H2
SMARTSM003555.3196221IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280198221IPR007087Zinc finger, C2H2
SMARTSM0035518224245IPR015880Zinc finger, C2H2-like
SuperFamilySSF576679.27E-8239290No hitNo description
SMARTSM003550.0018255280IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.884255285IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.5E-5256281IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280257280IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.7E-6282308IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.099286312IPR007087Zinc finger, C2H2
SMARTSM003552.5286312IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280288312IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MVMMEAAAAE KERVVIFRDI RRYYCDYCGI CRSKKSLITS HVLTHHKEEM DKETVDGDGV  60
KQGVKSNTCE KCGASFKKPA YLVQHMQSHS LERPFRCSVD DCHASYRRKD HLTRHLFHHE  120
GKLFKCELEN CDRKFVYPSN LKRHVRELHD ESSPCGSVGG EKQYVCQELG CGKAFRYPSK  180
LQKHVDSHVN LDSVEAMCLE PGCMKHFSNK KCLKAHIQSC HQYINCDICG TKQLRKNIKR  240
HLRTHEPVSC STERIKCHFK GCQHTFSTKT NLNQHVKAVH LEQRPYECGF PGCGRRFSYK  300
HVRDNHEKSG LHVYTPGDFM ESDQQFRSRP RGGRKRKFPT VEMLIRKRVT PPTEFDECHT  360
FLHEMETEDH *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A2e-147221620155PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D2e-147221620155PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1328336RPRGGRKRK
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0391s0180.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024446707.10.0transcription factor IIIA
SwissprotQ84MZ41e-140TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A2K1WRF60.0A0A2K1WRF6_POPTR; Uncharacterized protein
STRINGPOPTR_0013s11300.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30693370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-142transcription factor IIIA