PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0389s0210.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

C2H2

Protein Properties

Length: 407aa MW: 44232.1 Da PI: 9.5447

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0389s0210.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.1	0.00014	172	193	3	23
ETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 CpdCgksFsrksnLkrHirt.H 23 C+ Cg++F+ ++L+ H+++ H SapurV1A.0389s0210.1.p 172 CTQCGEVFPKIESLELHQKVrH 193 *******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.556	170	198	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	172	193	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	4.6E-24	195	404	No hit	No description
Gene3D	G3DSA:3.90.228.10	2.5E-12	196	404	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence Send to blast
MAALTFLQEH KETREKNPSR SKRKLQKEKE KEKQPSSWDQ IKNLLTCKQI EGSRVHDPSK 60 NPNGHSKFGS SCSSICSFKA VVHGNTRVVH RADNSPESST VGQETGLLSR KDGSTRSSST 120 RSLAASGRSN GGVTYSSSSR GMQFRKLSGC YECHMIVDPS RCPSARTTIS ACTQCGEVFP 180 KIESLELHQK VRHAVSELAP EDSGRNIVEI IFKSSWVRKD NPGCKIERIL KVNNTQRTIQ 240 RFEECRDAVK TRALSSTRKN PRCAADGNEL LRFHCTTLTC SLGSRGSSSL CGSIPGCGIC 300 TIIRHGFQGK GCKGVLTTAS SGRAHDSFRG CTDERRAMLV CRVIAGRVKR VAEDAPPSEE 360 DGATSAAAGS YDSVAGYAGI YSSLEELSVF NPRAILPCFV VIYKAL*

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence Send to blast

MAALTFLQEH KETREKNPSR SKRKLQKEKE KEKQPSSWDQ IKNLLTCKQI EGSRVHDPSK  60
NPNGHSKFGS SCSSICSFKA VVHGNTRVVH RADNSPESST VGQETGLLSR KDGSTRSSST  120
RSLAASGRSN GGVTYSSSSR GMQFRKLSGC YECHMIVDPS RCPSARTTIS ACTQCGEVFP  180
KIESLELHQK VRHAVSELAP EDSGRNIVEI IFKSSWVRKD NPGCKIERIL KVNNTQRTIQ  240
RFEECRDAVK TRALSSTRKN PRCAADGNEL LRFHCTTLTC SLGSRGSSSL CGSIPGCGIC  300
TIIRHGFQGK GCKGVLTTAS SGRAHDSFRG CTDERRAMLV CRVIAGRVKR VAEDAPPSEE  360
DGATSAAAGS YDSVAGYAGI YSSLEELSVF NPRAILPCFV VIYKAL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0389s0210.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024456286.1	0.0	uncharacterized protein LOC7493961
TrEMBL	A0A2K2ALL9	0.0	A0A2K2ALL9_POPTR; Uncharacterized protein
STRING	POPTR_0005s25950.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10341	30	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	1e-142	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0389s0210.1.p