PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0385s0090.7.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family LSD
Protein Properties Length: 119aa    MW: 12466.6 Da    PI: 8.0751
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0385s0090.7.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD132.41.6e-10731125
                 zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                            C gC  +L YP GA++V+CalC tV
  SapurV1A.0385s0090.7.p  7 CRGCASVLLYPSGATNVCCALCSTV 31
                            9**********************99 PP

2zf-LSD144.13.3e-144670125
                 zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                            C gCr lL+YP GA+sVRC++C++V
  SapurV1A.0385s0090.7.p 46 CRGCRSLLMYPHGATSVRCSCCHAV 70
                            9***********************9 PP

3zf-LSD140.74e-1384108125
                 zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                             Cg+C t+L+YP G+psV+C++C+ V
  SapurV1A.0385s0090.7.p  84 CGNCWTTLMYPNGSPSVKCPVCQYV 108
                             ***********************87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010532.5E-9434IPR005735Zinc finger, LSD1-type
PfamPF069434.0E-8731IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010532.1E-154372IPR005735Zinc finger, LSD1-type
PfamPF069437.6E-124670IPR005735Zinc finger, LSD1-type
Gene3DG3DSA:3.30.40.106.1E-560111IPR013083Zinc finger, RING/FYVE/PHD-type
TIGRFAMsTIGR010532.0E-1081111IPR005735Zinc finger, LSD1-type
PfamPF069431.3E-1284108IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MQSQVVCRGC ASVLLYPSGA TNVCCALCST VTSIPSPGMD MAQLICRGCR SLLMYPHGAT  60
SVRCSCCHAV NLAPGYNQLA HVNCGNCWTT LMYPNGSPSV KCPVCQYVTN VSVSALMH*
Functional Description ? help Back to Top
Source Description
UniProtNegative regulator of programmed cell death and hypersensitive response (HR). Positive regulator of callus differentiation. {ECO:0000269|PubMed:15915636}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0385s0090.7.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. Down-regulated by dark. {ECO:0000269|PubMed:15915636}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1826847e-48AC182684.2 Populus trichocarpa clone Pop1-37C15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011011055.19e-71PREDICTED: protein LOL2-like isoform X2
RefseqXP_024462601.19e-71protein LSD1 isoform X5
SwissprotQ0J7V91e-47LSD1_ORYSJ; Protein LSD1
TrEMBLA0A2K2CD282e-69A0A2K2CD28_POPTR; Uncharacterized protein
TrEMBLA0A2K2CD303e-69A0A2K2CD30_POPTR; Uncharacterized protein
STRINGPOPTR_0001s43300.13e-70(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.19e-48lsd one like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]