PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0385s0090.7.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | LSD | ||||||||
Protein Properties | Length: 119aa MW: 12466.6 Da PI: 8.0751 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 32.4 | 1.6e-10 | 7 | 31 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C gC +L YP GA++V+CalC tV SapurV1A.0385s0090.7.p 7 CRGCASVLLYPSGATNVCCALCSTV 31 9**********************99 PP | |||||||
2 | zf-LSD1 | 44.1 | 3.3e-14 | 46 | 70 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C gCr lL+YP GA+sVRC++C++V SapurV1A.0385s0090.7.p 46 CRGCRSLLMYPHGATSVRCSCCHAV 70 9***********************9 PP | |||||||
3 | zf-LSD1 | 40.7 | 4e-13 | 84 | 108 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C t+L+YP G+psV+C++C+ V SapurV1A.0385s0090.7.p 84 CGNCWTTLMYPNGSPSVKCPVCQYV 108 ***********************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 2.5E-9 | 4 | 34 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 4.0E-8 | 7 | 31 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 2.1E-15 | 43 | 72 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 7.6E-12 | 46 | 70 | IPR005735 | Zinc finger, LSD1-type |
Gene3D | G3DSA:3.30.40.10 | 6.1E-5 | 60 | 111 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
TIGRFAMs | TIGR01053 | 2.0E-10 | 81 | 111 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.3E-12 | 84 | 108 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 119 aa Download sequence Send to blast |
MQSQVVCRGC ASVLLYPSGA TNVCCALCST VTSIPSPGMD MAQLICRGCR SLLMYPHGAT 60 SVRCSCCHAV NLAPGYNQLA HVNCGNCWTT LMYPNGSPSV KCPVCQYVTN VSVSALMH* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Negative regulator of programmed cell death and hypersensitive response (HR). Positive regulator of callus differentiation. {ECO:0000269|PubMed:15915636}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0385s0090.7.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. Down-regulated by dark. {ECO:0000269|PubMed:15915636}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC182684 | 7e-48 | AC182684.2 Populus trichocarpa clone Pop1-37C15, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011011055.1 | 9e-71 | PREDICTED: protein LOL2-like isoform X2 | ||||
Refseq | XP_024462601.1 | 9e-71 | protein LSD1 isoform X5 | ||||
Swissprot | Q0J7V9 | 1e-47 | LSD1_ORYSJ; Protein LSD1 | ||||
TrEMBL | A0A2K2CD28 | 2e-69 | A0A2K2CD28_POPTR; Uncharacterized protein | ||||
TrEMBL | A0A2K2CD30 | 3e-69 | A0A2K2CD30_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s43300.1 | 3e-70 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.1 | 9e-48 | lsd one like 1 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0385s0090.7.p |
Publications ? help Back to Top | |||
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