PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0385s0090.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | LSD | ||||||||
Protein Properties | Length: 172aa MW: 18003.9 Da PI: 8.3241 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 31.6 | 2.8e-10 | 7 | 31 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C gC +L YP GA++V+CalC tV SapurV1A.0385s0090.3.p 7 CRGCASVLLYPSGATNVCCALCSTV 31 9**********************99 PP | |||||||
2 | zf-LSD1 | 43.3 | 5.9e-14 | 46 | 70 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C gCr lL+YP GA+sVRC++C++V SapurV1A.0385s0090.3.p 46 CRGCRSLLMYPHGATSVRCSCCHAV 70 9***********************9 PP | |||||||
3 | zf-LSD1 | 39.9 | 7.1e-13 | 84 | 108 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C t+L+YP G+psV+C++C+ V SapurV1A.0385s0090.3.p 84 CGNCWTTLMYPNGSPSVKCPVCQYV 108 **********************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 4.7E-9 | 4 | 34 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 7.2E-8 | 7 | 31 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 3.9E-15 | 43 | 72 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.4E-11 | 46 | 70 | IPR005735 | Zinc finger, LSD1-type |
Gene3D | G3DSA:3.30.40.10 | 1.1E-4 | 60 | 111 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
TIGRFAMs | TIGR01053 | 3.8E-10 | 81 | 111 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 2.4E-12 | 84 | 108 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MQSQVVCRGC ASVLLYPSGA TNVCCALCST VTSIPSPGMD MAQLICRGCR SLLMYPHGAT 60 SVRCSCCHAV NLAPGYNQLA HVNCGNCWTT LMYPNGSPSV KCPVCQYVTN VSMANMRVPL 120 PANRPNGTSG TPPSTSMTQT VVVENPMSVD ESGKLVSNVV VGVTTDKKIP R* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Negative regulator of reactive oxygen-induced cell death, cold stress-induced cell death, pathogen-induced hypersensitive response (HR), basal disease resistance. May be involved in the induction of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. Antagonizes the function of BZIP10, a positive regulator of cell death, by interacting in the cytoplasm and preventing its nuclear localization. Controls lysigenous aerenchyma in hypocotyls under root hypoxia. Required for leaf acclimation in response to excess excitation energy. {ECO:0000269|PubMed:10550898, ECO:0000269|PubMed:11595797, ECO:0000269|PubMed:11844114, ECO:0000269|PubMed:12732715, ECO:0000269|PubMed:15347794, ECO:0000269|PubMed:16957775, ECO:0000269|PubMed:18055613, ECO:0000269|PubMed:18790826, ECO:0000269|PubMed:20456049, ECO:0000269|PubMed:21097903}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0385s0090.3.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By methyl viologen. {ECO:0000269|PubMed:20456049}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC182684 | 2e-43 | AC182684.2 Populus trichocarpa clone Pop1-37C15, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024462592.1 | 1e-109 | protein LOL2 isoform X3 | ||||
Swissprot | P94077 | 3e-66 | LSD1_ARATH; Protein LSD1 | ||||
TrEMBL | A0A2K2CD30 | 1e-107 | A0A2K2CD30_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s43300.1 | 1e-106 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.7 | 5e-66 | LSD family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0385s0090.3.p |
Publications ? help Back to Top | |||
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