PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0382s0120.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family SBP
Protein Properties Length: 291aa    MW: 32529.1 Da    PI: 9.632
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0382s0120.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP1291.8e-40172249178
                             --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                     SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                             +Cqv gC++ l +ak+yhrrhkvCe hskap+v+v gleqrfCqqCsrfh +sefD++krsCrrrLa+hnerrrk+++
  SapurV1A.0382s0120.2.p 172 RCQVVGCNVALLNAKDYHRRHKVCELHSKAPKVIVLGLEQRFCQQCSRFHLVSEFDNAKRSCRRRLAGHNERRRKSSQ 249
                             6**************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.7E-34166234IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.864170247IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.76E-38171252IPR004333Transcription factor, SBP-box
PfamPF031101.0E-31173246IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MENGGNKGQE NDHANLSWDI WELNTSRFDL VNGSNSTAAT DTFFTTTATS MVESGSPCTH  60
PEGSSAHGFL FPYQNSWLYH QSSNNSYQQL SLYAGDGSNL PPDPHPMCLK LGKRHYFENS  120
TSNNSHNNHP VSDRHEVGGF SIGKRGKPYY SVGGGGGDHD GPSSSTSVTV PRCQVVGCNV  180
ALLNAKDYHR RHKVCELHSK APKVIVLGLE QRFCQQCSRF HLVSEFDNAK RSCRRRLAGH  240
NERRRKSSQD SVSRNSSQDR IPVWRGCRLL GKHYYRLRNQ LKYISLRKTA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A8e-31164246284squamosa promoter binding protein-like 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0382s0120.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006375256.11e-152squamosa promoter-binding-like protein 7 isoform X1
RefseqXP_024440557.11e-152squamosa promoter-binding-like protein 7 isoform X2
TrEMBLU5FPG51e-150U5FPG5_POPTR; Uncharacterized protein
STRINGPOPTR_0014s05690.11e-151(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.16e-36squamosa promoter binding protein-like 8