PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0379s0280.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 324aa MW: 36244 Da PI: 9.8586 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 351 | 2.6e-107 | 1 | 323 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkg.yye.......................paaslkenlglqlmssiaerdakirernlalsekkaavaerdmafl 61 mdd g+++ r k yy+ ++++l+ +++++m+++ erd++irernlal+ekk+a+a+rd+a + SapurV1A.0379s0280.4.p 1 MDDGGQHQngRYKMdYYKaahphphphppawnmmsqhqvkeQTNALA--MNKKIMTILIERDDAIRERNLALAEKKEALAARDEAIQ 85 88888776688888899999999999999999999877743335555..99************************************ PP GAGA_bind 62 qrdkalaernkalverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekk 148 qr+kal er+kal+erdn+l+ +++en+ ++ p++ ++ +gtk i + + + ++++a ++ e++ ++alpi++ + e+ +++ SapurV1A.0379s0280.4.p 86 QREKALVERDKALMERDNALAVFQYRENT--MNYPSSGGSQRGTKRIPHPVY-HSNGMSEEALDTGEMHVTDALPISSVTAETGKAR 169 ****************************9..5678889999*******7766.8899********************9999888888 PP GAGA_bind 149 kkkkrqrakkpkekkakkkkkksekskkkvkkesad..erskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSa 233 ++k+++++k ka k+++k++ ++ ++++a+ ++ k e++s++++ln +++De+t+P+PvCsCtG++rqCYkWG+GGWqSa SapurV1A.0379s0280.4.p 170 QTKRSKENKA-VGLKAAKPTRKGNRVSEDLNRQGASdgKKIKVEWDSQEVGLNLINFDETTMPAPVCSCTGVSRQCYKWGSGGWQSA 255 8775554444.33344444444433333333333322478*********************************************** PP GAGA_bind 234 CCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 CCttt+S yPLP+++++r+aR++grKmS+++f++lL+++aaeG+dls p+DLkd+WA+HGtn+++ti+ SapurV1A.0379s0280.4.p 256 CCTTTLSSYPLPQMPNKRHARVGGRKMSGNVFTRLLSRMAAEGHDLSIPLDLKDYWARHGTNRYITIK 323 *******************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF06217 | 1.3E-99 | 1 | 323 | IPR010409 | GAGA-binding transcriptional activator |
SMART | SM01226 | 1.6E-171 | 1 | 323 | IPR010409 | GAGA-binding transcriptional activator |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0050793 | Biological Process | regulation of developmental process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 324 aa Download sequence Send to blast |
MDDGGQHQNG RYKMDYYKAA HPHPHPHPPA WNMMSQHQVK EQTNALAMNK KIMTILIERD 60 DAIRERNLAL AEKKEALAAR DEAIQQREKA LVERDKALME RDNALAVFQY RENTMNYPSS 120 GGSQRGTKRI PHPVYHSNGM SEEALDTGEM HVTDALPISS VTAETGKARQ TKRSKENKAV 180 GLKAAKPTRK GNRVSEDLNR QGASDGKKIK VEWDSQEVGL NLINFDETTM PAPVCSCTGV 240 SRQCYKWGSG GWQSACCTTT LSSYPLPQMP NKRHARVGGR KMSGNVFTRL LSRMAAEGHD 300 LSIPLDLKDY WARHGTNRYI TIK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0379s0280.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF148646 | 0.0 | EF148646.1 Populus trichocarpa x Populus deltoides clone WS0135_K07 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011047142.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE4 | ||||
Refseq | XP_011047147.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE4 | ||||
Refseq | XP_011047155.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE4 | ||||
Swissprot | Q8S8C6 | 1e-136 | BPC4_ARATH; Protein BASIC PENTACYSTEINE4 | ||||
TrEMBL | A0A1X9IVB1 | 0.0 | A0A1X9IVB1_POPTO; Uncharacterized protein | ||||
STRING | POPTR_0009s12820.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G21240.2 | 1e-131 | basic pentacysteine 4 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0379s0280.4.p |