PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0379s0280.3.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family BBR-BPC
Protein Properties Length: 324aa    MW: 36244 Da    PI: 9.8586
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0379s0280.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind3512.6e-10713231301
               GAGA_bind   1 mdddgsre..rnkg.yye.......................paaslkenlglqlmssiaerdakirernlalsekkaavaerdmafl 61 
                             mdd g+++  r k  yy+                       ++++l+  +++++m+++ erd++irernlal+ekk+a+a+rd+a +
  SapurV1A.0379s0280.3.p   1 MDDGGQHQngRYKMdYYKaahphphphppawnmmsqhqvkeQTNALA--MNKKIMTILIERDDAIRERNLALAEKKEALAARDEAIQ 85 
                             88888776688888899999999999999999999877743335555..99************************************ PP

               GAGA_bind  62 qrdkalaernkalverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekk 148
                             qr+kal er+kal+erdn+l+  +++en+  ++ p++ ++ +gtk i +    + + ++++a ++ e++ ++alpi++ + e+ +++
  SapurV1A.0379s0280.3.p  86 QREKALVERDKALMERDNALAVFQYRENT--MNYPSSGGSQRGTKRIPHPVY-HSNGMSEEALDTGEMHVTDALPISSVTAETGKAR 169
                             ****************************9..5678889999*******7766.8899********************9999888888 PP

               GAGA_bind 149 kkkkrqrakkpkekkakkkkkksekskkkvkkesad..erskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSa 233
                             ++k+++++k     ka k+++k++   ++ ++++a+  ++ k e++s++++ln +++De+t+P+PvCsCtG++rqCYkWG+GGWqSa
  SapurV1A.0379s0280.3.p 170 QTKRSKENKA-VGLKAAKPTRKGNRVSEDLNRQGASdgKKIKVEWDSQEVGLNLINFDETTMPAPVCSCTGVSRQCYKWGSGGWQSA 255
                             8775554444.33344444444433333333333322478*********************************************** PP

               GAGA_bind 234 CCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                             CCttt+S yPLP+++++r+aR++grKmS+++f++lL+++aaeG+dls p+DLkd+WA+HGtn+++ti+
  SapurV1A.0379s0280.3.p 256 CCTTTLSSYPLPQMPNKRHARVGGRKMSGNVFTRLLSRMAAEGHDLSIPLDLKDYWARHGTNRYITIK 323
                             *******************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062171.3E-991323IPR010409GAGA-binding transcriptional activator
SMARTSM012261.6E-1711323IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MDDGGQHQNG RYKMDYYKAA HPHPHPHPPA WNMMSQHQVK EQTNALAMNK KIMTILIERD  60
DAIRERNLAL AEKKEALAAR DEAIQQREKA LVERDKALME RDNALAVFQY RENTMNYPSS  120
GGSQRGTKRI PHPVYHSNGM SEEALDTGEM HVTDALPISS VTAETGKARQ TKRSKENKAV  180
GLKAAKPTRK GNRVSEDLNR QGASDGKKIK VEWDSQEVGL NLINFDETTM PAPVCSCTGV  240
SRQCYKWGSG GWQSACCTTT LSSYPLPQMP NKRHARVGGR KMSGNVFTRL LSRMAAEGHD  300
LSIPLDLKDY WARHGTNRYI TIK*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0379s0280.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1486460.0EF148646.1 Populus trichocarpa x Populus deltoides clone WS0135_K07 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011047142.10.0PREDICTED: protein BASIC PENTACYSTEINE4
RefseqXP_011047147.10.0PREDICTED: protein BASIC PENTACYSTEINE4
RefseqXP_011047155.10.0PREDICTED: protein BASIC PENTACYSTEINE4
SwissprotQ8S8C61e-136BPC4_ARATH; Protein BASIC PENTACYSTEINE4
TrEMBLA0A1X9IVB10.0A0A1X9IVB1_POPTO; Uncharacterized protein
STRINGPOPTR_0009s12820.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21240.21e-131basic pentacysteine 4