PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0377s0020.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family WRKY
Protein Properties Length: 377aa    MW: 41439.8 Da    PI: 5.4121
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0377s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.38.5e-30134195159
                             ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                    WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                             ldDg++WrKYGqK + g+++pr+YYrCt++   gC ++k+v+rs+edp+++eitY+g+H+++
  SapurV1A.0377s0020.1.p 134 LDDGFSWRKYGQKAILGAKYPRGYYRCTHRnvqGCLATKQVQRSDEDPTIFEITYRGRHTCT 195
                             59***************************98999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.284129192IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.6E-29131196IPR003657WRKY domain
SuperFamilySSF1182904.71E-26133196IPR003657WRKY domain
SMARTSM007746.1E-42134196IPR003657WRKY domain
PfamPF031064.3E-27135194IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MANMGDWEQK NLVEELTLGM ELAKQLQIHL NVSSSPRETR EMLLQGILTS YEKALSMLNL  60
GGGSVAGELH PVGGITIRNS ESPPSLSGSP RSEDSDRDTR EQRHIDYGSS SRKSMPRWTK  120
KVRVNPGMGL EGPLDDGFSW RKYGQKAILG AKYPRGYYRC THRNVQGCLA TKQVQRSDED  180
PTIFEITYRG RHTCTQASNS LPPSQLGSEN QGPTTNITIE PQQNQPRQEN NPHTQELLLN  240
FRRGLKVITE ELDSGGQQSF PADHTFQFPS TSTVEPENSS LFAPSMVENN FLGSFPPSFI  300
NPSGSATNYY SVSPNDQIQH SFAGNKNCQS SEPELTDHII SAAASTTTSL TVGLDFPFGN  360
VDIDPSFTFD NSGFLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-20134194868OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0377s0020.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3774470.0GQ377447.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 27 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002318373.10.0probable WRKY transcription factor 30
TrEMBLA0A3Q9EE230.0A0A3Q9EE23_POPTO; WRKY DNA-binding protein 30
STRINGPOPTR_0012s01380.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.12e-60WRKY family protein