PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0376s0080.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family HSF
Protein Properties Length: 357aa    MW: 40753.9 Da    PI: 8.1999
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0376s0080.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.43.7e-36461372102
                             HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXX CS
            HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkk 88 
                             Fl+k++++++d+++++++sw++ g+sfvv+d++ f++++Lp+yFkh+nf+SFvRQLn+YgF+k++ ++         weF+++ F +
  SapurV1A.0376s0080.1.p  46 FLTKTFDMVDDPTTNHIVSWNRGGSSFVVWDPHLFSTNLLPRYFKHNNFSSFVRQLNTYGFRKIDPDR---------WEFANEGFLR 123
                             9****************************************************************999.........********** PP

                             XXXXXXXXXXXXXX CS
            HSF_DNA-bind  89 gkkellekikrkks 102
                             g+k+ll++ikr+k 
  SapurV1A.0376s0080.1.p 124 GQKHLLRNIKRRKA 137
                             ***********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.0E-6242135IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.106.7E-4042135IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.36E-3642135IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000569.9E-204669IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.0E-3246135IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.9E-208496IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434085109IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.9E-2097109IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MNPYLTVKRE YAGSSSSPPS GGDKPPRIIL PPQPREGLHD TGPPPFLTKT FDMVDDPTTN  60
HIVSWNRGGS SFVVWDPHLF STNLLPRYFK HNNFSSFVRQ LNTYGFRKID PDRWEFANEG  120
FLRGQKHLLR NIKRRKAPYQ PLTQQQAPDA CVEVGRFGLD GEMDRLKRDK QVLIMELVKL  180
RQQQQNSRSY IQAMEQRIQG IEQKQLQMMR FLARAMQKPA FLQQLVQQKE KRKELEEALT  240
KKRRRPIDQG FRGGGGGKSC HIGGSANPIK AEPLEFRDYE SEVSELEALA MEMQGYGRAR  300
REQEDGVEEV ETPESKGREL DEGFWEELLN ESSGGGEDED VNTLAERLGY LGSSPK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B6e-254413527129Heat shock factor protein 1
5d5v_B6e-254413527129Heat shock factor protein 1
5d5v_D6e-254413527129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1230244KRKELEEALTKKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0376s0080.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP0139870.0KP013987.1 Populus simonii heat shock transcription factor A7a1 (HsfA7a1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024450269.10.0heat stress transcription factor A-6b
SwissprotQ9LUH81e-127HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLB9GSI70.0B9GSI7_POPTR; Uncharacterized protein
STRINGPOPTR_0005s23640.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-119heat shock transcription factor A6B