PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0372s0180.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family WRKY
Protein Properties Length: 321aa    MW: 35479.9 Da    PI: 9.0097
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0372s0180.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.53.1e-29163222159
                             ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                    WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                             ++Dgy+WrKYGqK+ ++++ pr+Y++C+s+ +Cpvkkkv++sae+p++++ tYegeHnh 
  SapurV1A.0372s0180.1.p 163 VKDGYQWRKYGQKVTRDNPSPRAYFKCSSSpSCPVKKKVQKSAENPTILVATYEGEHNHA 222
                             58**************************999****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081125.35158224IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.0E-28161222IPR003657WRKY domain
SuperFamilySSF1182906.8E-24161222IPR003657WRKY domain
SMARTSM007747.1E-33163223IPR003657WRKY domain
PfamPF031069.4E-24164221IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MESSWVNTSL DLNINPFNHV NENPQVQKIK KLERYSTRVE QKVQVKNEDG VGVLVEELTR  60
ISGENKKLTE MLSAVCQNYI VLEKQLADLM SKNSEKELST PLLSRKRTAG SEDYSNVING  120
IGGGNAESSS LDEESSKRPK ENLKSKISTA YFRTSEFDPS LVVKDGYQWR KYGQKVTRDN  180
PSPRAYFKCS SSPSCPVKKK VQKSAENPTI LVATYEGEHN HASHSQQEPL PGSIHSSSFG  240
QVFSTPTPIR SSDPTVILDL IQSGTQVDTA TMAARVVEVP AIQKILVQQM ATSLTRDPNF  300
TAALAAAISG RFNQTRIEKW *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-191542211174Probable WRKY transcription factor 4
2lex_A3e-191542211174Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0372s0180.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006371762.11e-180probable WRKY transcription factor 40
TrEMBLU5FH191e-178U5FH19_POPTR; Uncharacterized protein
STRINGPOPTR_0018s02470.11e-179(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97334115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.19e-69WRKY DNA-binding protein 40