PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0372s0180.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | WRKY | ||||||||
Protein Properties | Length: 321aa MW: 35479.9 Da PI: 9.0097 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 92.5 | 3.1e-29 | 163 | 222 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK+ ++++ pr+Y++C+s+ +Cpvkkkv++sae+p++++ tYegeHnh SapurV1A.0372s0180.1.p 163 VKDGYQWRKYGQKVTRDNPSPRAYFKCSSSpSCPVKKKVQKSAENPTILVATYEGEHNHA 222 58**************************999****************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 25.35 | 158 | 224 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 8.0E-28 | 161 | 222 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.8E-24 | 161 | 222 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.1E-33 | 163 | 223 | IPR003657 | WRKY domain |
Pfam | PF03106 | 9.4E-24 | 164 | 221 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 321 aa Download sequence Send to blast |
MESSWVNTSL DLNINPFNHV NENPQVQKIK KLERYSTRVE QKVQVKNEDG VGVLVEELTR 60 ISGENKKLTE MLSAVCQNYI VLEKQLADLM SKNSEKELST PLLSRKRTAG SEDYSNVING 120 IGGGNAESSS LDEESSKRPK ENLKSKISTA YFRTSEFDPS LVVKDGYQWR KYGQKVTRDN 180 PSPRAYFKCS SSPSCPVKKK VQKSAENPTI LVATYEGEHN HASHSQQEPL PGSIHSSSFG 240 QVFSTPTPIR SSDPTVILDL IQSGTQVDTA TMAARVVEVP AIQKILVQQM ATSLTRDPNF 300 TAALAAAISG RFNQTRIEKW * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-19 | 154 | 221 | 11 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 3e-19 | 154 | 221 | 11 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0372s0180.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006371762.1 | 1e-180 | probable WRKY transcription factor 40 | ||||
TrEMBL | U5FH19 | 1e-178 | U5FH19_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0018s02470.1 | 1e-179 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF973 | 34 | 115 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80840.1 | 9e-69 | WRKY DNA-binding protein 40 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0372s0180.1.p |