PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0372s0170.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family WRKY
Protein Properties Length: 263aa    MW: 29420.1 Da    PI: 7.4991
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0372s0170.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.72.8e-2992151159
                             ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                    WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                             ++Dgy+WrKYGqK+ k+++ pr+Y+rC++a +Cpvkkkv+r+aed +v++  Y geHnhe
  SapurV1A.0372s0170.2.p  92 VKDGYQWRKYGQKVTKDNPSPRAYFRCSMApNCPVKKKVQRCAEDDSVLVASYDGEHNHE 151
                             58***************************99****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.0E-2980151IPR003657WRKY domain
SuperFamilySSF1182901.7E-2587152IPR003657WRKY domain
PROSITE profilePS5081125.33987153IPR003657WRKY domain
SMARTSM007741.7E-3392152IPR003657WRKY domain
PfamPF031065.8E-2493151IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MDVFPSYREK VEELQSELEH RQKENEKLRM VLGIMTRNFS ILQDKIQETG EHQQKAASNL  60
TEGDRSCHEI LASNKRPRSE VPITKASRIL IVKDGYQWRK YGQKVTKDNP SPRAYFRCSM  120
APNCPVKKKV QRCAEDDSVL VASYDGEHNH EPNGSHGQYL CSANSSSSSK SSISIHGPIF  180
PIETPPPQPS IALDLTLSSP DNQHSEKPCQ RSMEVCEKID KNYSTRYIEE YVASLTTDPS  240
FSVALAAAVA RSMSDLSTSR LL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A8e-20911511372WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0372s0170.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011036676.11e-136PREDICTED: probable WRKY transcription factor 40
TrEMBLA0A060APS81e-132A0A060APS8_POPTO; WRKY60 protein
STRINGPOPTR_0018s02480.11e-132(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31800.12e-37WRKY DNA-binding protein 18