PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SapurV1A.0372s0170.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 273aa MW: 30563.3 Da PI: 8.063 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 92.6 | 2.9e-29 | 102 | 161 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK+ k+++ pr+Y+rC++a +Cpvkkkv+r+aed +v++ Y geHnhe SapurV1A.0372s0170.1.p 102 VKDGYQWRKYGQKVTKDNPSPRAYFRCSMApNCPVKKKVQRCAEDDSVLVASYDGEHNHE 161 58***************************99****************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.4E-29 | 93 | 161 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 24.799 | 97 | 163 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.27E-25 | 99 | 162 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.7E-33 | 102 | 162 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.1E-24 | 103 | 161 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 273 aa Download sequence Send to blast |
MDVFPSYREK VEELQSELEH RQKENEKLRM VLGIMTRNFS ILQDKIQETG EHQQKAASNL 60 TEGDRSCHEI LASNKRPRSE VPITKASRIL VRSRSNDKSL IVKDGYQWRK YGQKVTKDNP 120 SPRAYFRCSM APNCPVKKKV QRCAEDDSVL VASYDGEHNH EPNGSHGQYL CSANSSSSSK 180 SSISIHGPIF PIETPPPQPS IALDLTLSSP DNQHSEKPCQ RSMEVCEKID KNYSTRYIEE 240 YVASLTTDPS FSVALAAAVA RSMSDLSTSR LL* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 4e-20 | 87 | 161 | 1 | 72 | WRKY transcription factor 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | SapurV1A.0372s0170.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011036676.1 | 1e-146 | PREDICTED: probable WRKY transcription factor 40 | ||||
TrEMBL | A0A060APS8 | 1e-141 | A0A060APS8_POPTO; WRKY60 protein | ||||
STRING | POPTR_0018s02480.1 | 1e-141 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7398 | 30 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G80840.1 | 1e-41 | WRKY DNA-binding protein 40 |
Link Out ? help Back to Top | |
---|---|
Phytozome | SapurV1A.0372s0170.1.p |