PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0372s0120.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | WRKY | ||||||||
Protein Properties | Length: 455aa MW: 49977.9 Da PI: 8.809 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 74.7 | 1.1e-23 | 97 | 154 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 DgynWrKYG+K+vkgs++ +sYY C +++C +kkkv+++++ ++vv+++Y g+H+h+ SapurV1A.0372s0120.1.p 97 ADGYNWRKYGRKVVKGSNNLKSYYSCVYSSCYAKKKVQHCDQSGHVVDVVYIGNHHHD 154 6********************************************************7 PP | |||||||
2 | WRKY | 93.8 | 1.2e-29 | 301 | 358 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK+ kg+ rsYYrC+s+ Cp++k+vers++d + ++itY g+H+h+ SapurV1A.0372s0120.1.p 301 NDGYRWRKYGQKMLKGNSLVRSYYRCSSSACPARKHVERSTDDATSTTITYAGKHDHD 358 8********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 6.8E-23 | 89 | 156 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.75E-21 | 94 | 156 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.6E-22 | 96 | 155 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 19.956 | 98 | 156 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.7E-18 | 98 | 153 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 3.3E-30 | 285 | 360 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.58E-25 | 292 | 360 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.587 | 295 | 360 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.4E-31 | 300 | 359 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.8E-23 | 301 | 357 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 455 aa Download sequence Send to blast |
MSNTPVLGFQ GGNEMFQQEA CAGTKPEADR VQLEHLAECA NSPCEVFSLT SAALSFPYSA 60 PEPQKPRSMR ALGLVLNQQN SDSETRHPHV VVESPPADGY NWRKYGRKVV KGSNNLKSYY 120 SCVYSSCYAK KKVQHCDQSG HVVDVVYIGN HHHDPPQRKC IRVVSSAKHT TGSQVLDPSV 180 QKLVWLDISV CSADGRHSSL HVPESEQQSS SISNGNVGSR IKDRSDDESE SKRNFGSRSV 240 GPQQNGSCGI ASTGVQEKHG AEPRLKIRIK ERSAPCSVPA LKTKKEPGII IHTVSDEGSS 300 NDGYRWRKYG QKMLKGNSLV RSYYRCSSSA CPARKHVERS TDDATSTTIT YAGKHDHDKP 360 ASKKMQCSES RLISPAASTD DARRMKNISV SSRKPSSRCS VDGEVDLMGE KLSKLGAEQD 420 YKAVHSMHPG EIVSESWELK RYDDVFLSFI SVTI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 7e-23 | 289 | 360 | 3 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0372s0120.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024446284.1 | 0.0 | probable WRKY transcription factor 20 isoform X1 | ||||
TrEMBL | A0A2K1WUF6 | 0.0 | A0A2K1WUF6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0018s02550.1 | 1e-118 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16159 | 6 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13960.2 | 1e-36 | WRKY DNA-binding protein 4 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0372s0120.1.p |