PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0370s0030.9.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family HD-ZIP
Protein Properties Length: 627aa    MW: 70159.3 Da    PI: 7.3111
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0370s0030.9.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.51.7e-21106161156
                             TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                             r+k +++t+eq++e+e+lF+++++p++++r++L+k+lgL  rqVk+WFqNrR++ k
  SapurV1A.0370s0030.9.p 106 RKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 161
                             7999************************************************9877 PP
2START230.74.1e-722734981206
                             HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT- CS
                   START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.......dsgealrasgvvdmvlallveellddkeqWdetl 76 
                             e+a++a++el k+a+a+ep+W +s+    e++n+de++++f ++++       +s+ea+r+++vv+ +l++lv++++d++ qW+e++
  SapurV1A.0370s0030.9.p 273 EIANQAMEELKKMATAGEPLWIRSVetgrEILNYDEYTKEFGSEDSsnngrpkRSIEASRETRVVFVDLPRLVQSFMDVN-QWKEMF 358
                             57899************************************88777999*******************************.****** PP

                             S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEE CS
                   START  77 a....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgi 152
                             +    ka+t++vis+g      ga+qlm+ae q+l+p+vp R+++fvRy++ql+a++w+ivdvS+d  +++  ++s+++++++pSg+
  SapurV1A.0370s0030.9.p 359 PclisKAATVDVISNGeganrnGAVQLMFAEVQMLTPMVPtREVYFVRYCKQLNAEQWAIVDVSIDKVEDNI-DASLAKCRKRPSGC 444
                             **********************************************************************98.9************* PP

                             EEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                   START 153 liepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                             +ie+ksngh+kv+wveh +++++++h ++r +v+sgla+ga++w+atlq qce+
  SapurV1A.0370s0030.9.p 445 IIEDKSNGHCKVIWVEHLECQKSTVHTMFRTVVHSGLAFGARHWMATLQLQCER 498
                             ****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-2392157IPR009057Homeodomain-like
SuperFamilySSF466897.1E-2196164IPR009057Homeodomain-like
PROSITE profilePS5007118.22103163IPR001356Homeobox domain
SMARTSM003898.3E-19105167IPR001356Homeobox domain
PfamPF000468.0E-19106161IPR001356Homeobox domain
CDDcd000861.82E-16110161No hitNo description
PROSITE patternPS000270138161IPR017970Homeobox, conserved site
PROSITE profilePS5084839.869264501IPR002913START domain
SuperFamilySSF559618.52E-33266498No hitNo description
CDDcd088758.62E-112268497No hitNo description
Gene3DG3DSA:3.30.530.207.4E-5272493IPR023393START-like domain
PfamPF018521.8E-57273498IPR002913START domain
SMARTSM002341.6E-74273498IPR002913START domain
SuperFamilySSF559612.47E-6520609No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010062Biological Processnegative regulation of trichoblast fate specification
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 627 aa     Download sequence    Send to blast
MGVDMSNPPN SHIKDFFASP ALSLSLAGIF RGANVSHAAA AASVEVEEGD EGSGGGRRED  60
TVEISSETSG PMRSRSDDDL EGEGEHDEDD GDGDGEGDDK NKKKKRKKYH RHTAEQIREM  120
EALFKESPHP DEKQRQQLSK QLGLAPRQVK FWFQNRRTQI KAIQERHENS LLKTEMDKLR  180
EENKTMRETI NKACCPNCGT ATTSRGTSLT AEEQQLRIEN TKLKAEVEKL RAVIGKYSPG  240
ATASCSAGSD QENRSSLDFY TGIFGLDKTR ITEIANQAME ELKKMATAGE PLWIRSVETG  300
REILNYDEYT KEFGSEDSSN NGRPKRSIEA SRETRVVFVD LPRLVQSFMD VNQWKEMFPC  360
LISKAATVDV ISNGEGANRN GAVQLMFAEV QMLTPMVPTR EVYFVRYCKQ LNAEQWAIVD  420
VSIDKVEDNI DASLAKCRKR PSGCIIEDKS NGHCKVIWVE HLECQKSTVH TMFRTVVHSG  480
LAFGARHWMA TLQLQCERLV FFMATNVPTK DSTGVATLAG RKSILKLAQR MTWSFCRAIG  540
ASSYHTWNKV SSKTGEDIRV SSRKNLNDPG EPVGVILCAV SSVWLPVPSH ILFDFLRDEA  600
RRNEVSQKCH YSVKNPIKMG YYCCMP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101106KKKKRK
2101107KKKKRKK
3103107KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0370s0030.9.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2090001e-121AC209000.1 Populus trichocarpa clone POP023-H09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002304207.20.0homeobox-leucine zipper protein GLABRA 2
SwissprotP466070.0HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBLA0A2I4KKD40.0A0A2I4KKD4_POPTR; HD-ZIP family protein
TrEMBLB9GXB60.0B9GXB6_POPTR; Uncharacterized protein
STRINGPOPTR_0003s05100.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Wu R,Citovsky V
    Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.
    Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553
    [PMID:28526410]