PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0370s0030.4.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family HD-ZIP
Protein Properties Length: 659aa    MW: 73953.7 Da    PI: 7.7293
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0370s0030.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.41.8e-21106161156
                             TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                             r+k +++t+eq++e+e+lF+++++p++++r++L+k+lgL  rqVk+WFqNrR++ k
  SapurV1A.0370s0030.4.p 106 RKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 161
                             7999************************************************9877 PP
2START170.41.2e-532734571165
                             HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT- CS
                   START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.......dsgealrasgvvdmvlallveellddkeqWdetl 76 
                             e+a++a++el k+a+a+ep+W +s+    e++n+de++++f ++++       +s+ea+r+++vv+ +l++lv++++d++ qW+e++
  SapurV1A.0370s0030.4.p 273 EIANQAMEELKKMATAGEPLWIRSVetgrEILNYDEYTKEFGSEDSsnngrpkRSIEASRETRVVFVDLPRLVQSFMDVN-QWKEMF 358
                             57899************************************88777999*******************************.****** PP

                             S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEE CS
                   START  77 a....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgi 152
                             +    ka+t++vis+g      ga+qlm+ae q+l+p+vp R+++fvRy++ql+a++w+ivdvS+d  +++  ++s+++++++pSg+
  SapurV1A.0370s0030.4.p 359 PclisKAATVDVISNGeganrnGAVQLMFAEVQMLTPMVPtREVYFVRYCKQLNAEQWAIVDVSIDKVEDNI-DASLAKCRKRPSGC 444
                             **********************************************************************98.9************* PP

                             EEEEECTCEEEEE CS
                   START 153 liepksnghskvt 165
                             +ie+ksngh+kv+
  SapurV1A.0370s0030.4.p 445 IIEDKSNGHCKVH 457
                             ***********98 PP
3START49.71.1e-16472530152206
                             EEEEEECTCE....EEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                   START 152 iliepksngh....skvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                             +++ +++       ++v+wveh +++++++h ++r +v+sgla+ga++w+atlq qce+
  SapurV1A.0370s0030.4.p 472 FCFLTVEHTSlrqsCQVIWVEHLECQKSTVHTMFRTVVHSGLAFGARHWMATLQLQCER 530
                             55555555555667*******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-2392157IPR009057Homeodomain-like
SuperFamilySSF466897.52E-2196164IPR009057Homeodomain-like
PROSITE profilePS5007118.22103163IPR001356Homeobox domain
SMARTSM003898.3E-19105167IPR001356Homeobox domain
PfamPF000468.5E-19106161IPR001356Homeobox domain
CDDcd000862.28E-16110161No hitNo description
PROSITE patternPS000270138161IPR017970Homeobox, conserved site
PROSITE profilePS5084837.198264533IPR002913START domain
SuperFamilySSF559612.2E-29266452No hitNo description
CDDcd088758.83E-106268529No hitNo description
PfamPF018521.3E-41273457IPR002913START domain
SMARTSM002341.3E-67273530IPR002913START domain
PfamPF018529.7E-11471530IPR002913START domain
SuperFamilySSF559612.2E-29485530No hitNo description
SuperFamilySSF559612.61E-6552641No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010062Biological Processnegative regulation of trichoblast fate specification
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 659 aa     Download sequence    Send to blast
MGVDMSNPPN SHIKDFFASP ALSLSLAGIF RGANVSHAAA AASVEVEEGD EGSGGGRRED  60
TVEISSETSG PMRSRSDDDL EGEGEHDEDD GDGDGEGDDK NKKKKRKKYH RHTAEQIREM  120
EALFKESPHP DEKQRQQLSK QLGLAPRQVK FWFQNRRTQI KAIQERHENS LLKTEMDKLR  180
EENKTMRETI NKACCPNCGT ATTSRGTSLT AEEQQLRIEN TKLKAEVEKL RAVIGKYSPG  240
ATASCSAGSD QENRSSLDFY TGIFGLDKTR ITEIANQAME ELKKMATAGE PLWIRSVETG  300
REILNYDEYT KEFGSEDSSN NGRPKRSIEA SRETRVVFVD LPRLVQSFMD VNQWKEMFPC  360
LISKAATVDV ISNGEGANRN GAVQLMFAEV QMLTPMVPTR EVYFVRYCKQ LNAEQWAIVD  420
VSIDKVEDNI DASLAKCRKR PSGCIIEDKS NGHCKVHACI YKPRAKMDRD KFCFLTVEHT  480
SLRQSCQVIW VEHLECQKST VHTMFRTVVH SGLAFGARHW MATLQLQCER LVFFMATNVP  540
TKDSTGVATL AGRKSILKLA QRMTWSFCRA IGASSYHTWN KVSSKTGEDI RVSSRKNLND  600
PGEPVGVILC AVSSVWLPVP SHILFDFLRD EARRNEVSQK CHYSVKNPIK MGYYCCMP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101106KKKKRK
2101107KKKKRKK
3103107KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0370s0030.4.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2090001e-121AC209000.1 Populus trichocarpa clone POP023-H09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002304207.20.0homeobox-leucine zipper protein GLABRA 2
SwissprotP466070.0HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBLA0A2I4KKD40.0A0A2I4KKD4_POPTR; HD-ZIP family protein
TrEMBLB9GXB60.0B9GXB6_POPTR; Uncharacterized protein
STRINGPOPTR_0003s05100.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Wu R,Citovsky V
    Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.
    Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553
    [PMID:28526410]