PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0361s0280.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | B3 | ||||||||
Protein Properties | Length: 227aa MW: 25368.6 Da PI: 10.862 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 50.9 | 2.9e-16 | 127 | 216 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k +++s+v+ +l lp +f+++ ++++ +tl de+ +++v + rk++ l++GWk+F+ a+gL +gD vvF+l++ SapurV1A.0361s0280.1.p 127 FIKSMLQSHVTGGFWLGLPVDFCRRSL--PRKDGVITLIDEDADEYQVIYLARKNG----LSGGWKGFAVAHGLLDGDAVVFQLIKP 207 89*********************9884..234558***************667776....************************997 PP SEE..EEEEE- CS B3 88 sefelvvkvfr 98 + f +v ++r SapurV1A.0361s0280.1.p 208 TAF--KVYIIR 216 777..888876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 9.5E-20 | 120 | 218 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.51E-24 | 121 | 219 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.77E-26 | 125 | 216 | No hit | No description |
PROSITE profile | PS50863 | 12.421 | 127 | 218 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.7E-14 | 127 | 216 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.6E-23 | 127 | 218 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MVAKKSAYEE SRQKRMEENK KRMEALNLHK LSQALKIPSP AKPSPMKRSK PRVVEKQVVV 60 VRRSSRVANK PAPVLKEVVL DRVVIPRRIS KPRNLSNRVY ATDEARAKAM EKAEKLQSNL 120 GSDHPIFIKS MLQSHVTGGF WLGLPVDFCR RSLPRKDGVI TLIDEDADEY QVIYLARKNG 180 LSGGWKGFAV AHGLLDGDAV VFQLIKPTAF KVYIIRVNGS EQGNSL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0361s0280.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF146978 | 0.0 | EF146978.1 Populus trichocarpa clone WS01225_L06 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024441189.1 | 1e-138 | B3 domain-containing protein At5g42700 | ||||
Refseq | XP_024441190.1 | 1e-138 | B3 domain-containing protein At5g42700 | ||||
Swissprot | Q9FMZ4 | 2e-77 | Y5270_ARATH; B3 domain-containing protein At5g42700 | ||||
TrEMBL | A0A2K1XPS3 | 1e-136 | A0A2K1XPS3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0014s03120.1 | 1e-128 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3336 | 31 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42700.1 | 4e-72 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0361s0280.1.p |
Publications ? help Back to Top | |||
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