PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0354s0060.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family WRKY
Protein Properties Length: 328aa    MW: 36946.8 Da    PI: 7.4004
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0354s0060.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.92.1e-33184241259
                             --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                    WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                             +Dgy+WrKYGqK vk+s++prsYYrCts++C+vkk+vers +dp++v++tYeg+Hnh+
  SapurV1A.0354s0060.1.p 184 EDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCTVKKRVERSFQDPSIVITTYEGQHNHH 241
                             8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.2E-35168243IPR003657WRKY domain
SuperFamilySSF1182903.4E-29176243IPR003657WRKY domain
PROSITE profilePS5081132.282178243IPR003657WRKY domain
SMARTSM007744.3E-39183242IPR003657WRKY domain
PfamPF031063.4E-26184241IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MSNEKEDPYN YDPFHYNIQH RTGRPVSVFP FFDDNNLSMY NQQTPLQNLQ EFNDDPSYMS  60
LTNCLHGSMD HYNTLSRALD VSCSSSEVIS PIEDGSKKIG AGELSAATNE NLPSTPNSSI  120
SNSSSNDGAA EEDSGKIKKD KQPKESTEDG DGDAKKLSKT KKKDKRQKEP RFAFLTKSEI  180
DHLEDGYRWR KYGQKAVKNS PYPRSYYRCT SQKCTVKKRV ERSFQDPSIV ITTYEGQHNH  240
HCPATLRGNA TGMLSPSLLA SASIGQSFPQ DLLTRFLPPS NQQGNQTSMF YHSHTPQNQQ  300
LQQHQLYAPD YGLLQDLVPS FIHKQHP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-281762441078Probable WRKY transcription factor 4
2lex_A2e-281762441078Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0354s0060.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002302140.10.0probable WRKY transcription factor 71
TrEMBLB9GT280.0B9GT28_POPTR; Uncharacterized protein
STRINGPOPTR_0002s06000.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22313483
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.17e-56WRKY DNA-binding protein 71