PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0351s0200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | WOX | ||||||||
Protein Properties | Length: 297aa MW: 33612.5 Da PI: 9.118 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.4 | 7e-20 | 58 | 119 | 1 | 57 |
TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r +R+++t+ ql +Lee ++ r+p+++++++++++l +++ ++V++WFqN++a+e+k SapurV1A.0351s0200.1.p 58 RNSRWNPTAAQLLALEEKYRCgIRTPTTDQIQQITSQLrrfgKIEGKNVFYWFQNHKARERK 119 689*****************99**************************************98 PP | |||||||
2 | Wus_type_Homeobox | 103.7 | 1.3e-33 | 59 | 120 | 3 | 64 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 ++RW+Pt+ Q+ Lee y++G+rtP++++iq+it++L+++Gkie+kNVfyWFQN+kaRer++ SapurV1A.0351s0200.1.p 59 NSRWNPTAAQLLALEEKYRCGIRTPTTDQIQQITSQLRRFGKIEGKNVFYWFQNHKARERKQ 120 79**********************************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 11.807 | 55 | 120 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 8.98E-11 | 56 | 125 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 7.3E-5 | 57 | 124 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.6E-17 | 58 | 119 | IPR001356 | Homeobox domain |
CDD | cd00086 | 0.002 | 58 | 115 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-7 | 60 | 120 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 297 aa Download sequence Send to blast |
MRMINGGDNN EPRMDDFFNP KPNTAATSLT YVGLKHHLGK TSEQSRGGKL KEQAEETRNS 60 RWNPTAAQLL ALEEKYRCGI RTPTTDQIQQ ITSQLRRFGK IEGKNVFYWF QNHKARERKQ 120 RRRRQVQQKH SNSTGHESLN TLKETGPRRT FLELDQTNNL VPHYSNCSTD HVEGPVSVNG 180 PAIAESGTYG WPEFQERELQ EMKSSSLGMH AVWKNMDLSS STPVRHHLST SAVNTAASKF 240 LSLEEHISLL KPAKTTAHAN HDDEIREIQT LQLFPLCSDD GNGANGQFFE FLPLKN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0351s0200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF982707 | 0.0 | KF982707.1 Populus tomentosa WOX6 (WOX6) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002314802.1 | 1e-162 | WUSCHEL-related homeobox 6 | ||||
TrEMBL | B9HW56 | 1e-160 | B9HW56_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0010s12150.1 | 1e-161 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2892 | 34 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01500.1 | 9e-28 | WOX family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0351s0200.1.p |