PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0350s0180.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family HSF
Protein Properties Length: 345aa    MW: 39727.5 Da    PI: 4.7702
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0350s0180.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.53.4e-36211132103
                             HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXX CS
            HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkk 88 
                             Fl+k+y+++ed+++++++sws+ +nsf+v+d++ f++++Lp+yFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +
  SapurV1A.0350s0180.1.p  21 FLSKTYDLIEDASTNHIVSWSRGNNSFIVWDPQAFSSSLLPRYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLR 98 
                             9****************************************************************999.........********** PP

                             XXXXXXXXXXXXXXX CS
            HSF_DNA-bind  89 gkkellekikrkkse 103
                             gkk+ll++i r++++
  SapurV1A.0350s0180.1.p  99 GKKHLLNNITRRRKS 113
                             ***********9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.6E-3815104IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.1E-5917110IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.71E-3418110IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.4E-3121110IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-192144IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-195971IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406084IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-197284IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MASTAIPQPM EGLREPVPPP FLSKTYDLIE DASTNHIVSW SRGNNSFIVW DPQAFSSSLL  60
PRYFKHNNFS SFVRQLNTYG FRKVDPDRWE FANEGFLRGK KHLLNNITRR RKSPQTQTSQ  120
QALEACVEVG TFGLDGEVNR LRRDKQVLMV ELVKLRQQQQ TTKACLQLME EKLKRTENKQ  180
QQMMSFLARA MQNPDFVQQL VQQKDMRKEL EEAISKKRRR PIDQGRSNFE VGEFGHGEGV  240
GTFVKIEHQE FGDLSDQFDV PEFHNQAMNM QGLSENQLIN LVEQRYEKGE EHEIKGNDID  300
EVFWEDLLNE DIDEEIAVLG GEGEDKEDEN VLVEQLGFLG SSAE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-231911318123Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107112TRRRKS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0350s0180.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP0139860.0KP013986.1 Populus simonii heat shock transcription factor A6b2 (HsfA6b2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002311642.10.0heat stress transcription factor A-6b
SwissprotQ9LUH81e-135HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A0N7DMJ10.0A0A0N7DMJ1_9ROSI; Heat shock transcription factor A6b2
STRINGPOPTR_0008s15740.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-129heat shock transcription factor A6B