PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0350s0050.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family CPP
Protein Properties Length: 767aa    MW: 84456.4 Da    PI: 6.3028
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0350s0050.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR50.93.1e-16466504240
                     TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                              +k+CnCkkskClk+YCeCfaag++C e C C+dC+Nk 
  SapurV1A.0350s0050.1.p 466 ACKRCNCKKSKCLKLYCECFAAGVYCIEPCACQDCFNKP 504
                             589**********************************96 PP
2TCR505.8e-16551589139
                     TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                             ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN 
  SapurV1A.0350s0050.1.p 551 RHKRGCNCKKSSCLKKYCECYQGGVGCSLNCRCEGCKNA 589
                             589***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.4E-18465506IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.259466591IPR005172CRC domain
PfamPF036381.1E-11468503IPR005172CRC domain
SMARTSM011144.4E-17551592IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.5E-11553589IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 767 aa     Download sequence    Send to blast
MAMDTPEKTQ ITSPLSKFED SPVFNYINSL SPIKPVKSIN IAQTFHSLSF ASLPSVFTSP  60
HVNSHKETRF LKRHNYVDLS KPEFSSENGN EVCNDEGLAE DAAQLYDNST ELQENFDSGV  120
SIRDGSVEPP GEHLKFTIEL PRTIKYDCGS PDSDQTPRCG TQADIVSKSA GTIASLAPLT  180
NVASHKDSPE GQVHLAGLYK TDSKKEATEC DWENLISDAS DLFIFNSPID ADGFKELFQK  240
SPNPVVGFCT SFNEVRKMQI VNPFGPGEQN EKEDPFTQPG ETIELTQMDP THDNLAANED  300
PDKYIISNPS KAVSNLHRGM RRRCLDFEKV GARRKNIEDG SSSGSVVVQS DEKITYENTQ  360
LVPFKPSSDS SRCILPGIGL HLNALAINAK DSKKIKHETF SSSVTLSGSA ASFHSPTSGQ  420
ELDESLTLVS AERDMDPNDN VVPFVEDFSQ TSPKKKRRRL EGEAEACKRC NCKKSKCLKL  480
YCECFAAGVY CIEPCACQDC FNKPIHEDTV LATRKQIESR NPLAFAPKVI RSSEPAPEIG  540
DESSKTPASA RHKRGCNCKK SSCLKKYCEC YQGGVGCSLN CRCEGCKNAF GRKDDFPNLG  600
SASVEMEDEP EDETEASEKN GVDKTLQKTE IQNNDEQHPH SALPTTPLRF SRPLVQLPFS  660
SKGKPPRSFL GVGSSSGLYT GQRYGKPNIL RPQWKFEKQF QNVPDDEIPE ILRENHSPSS  720
GIKTSSPNSK RVSPPQSNLE PSPGRRSGRK LILQSIPSFP SLTPHH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A5e-1747058814120Protein lin-54 homolog
5fd3_B5e-1747058814120Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1452459PKKKRRRL
2453458KKKRRR
3455459KRRRL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00624PBMTransfer from PK22848.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0350s0050.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2175860.0AC217586.1 Populus trichocarpa clone POP025-M11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024462660.10.0protein tesmin/TSO1-like CXC 2
TrEMBLA0A2K1ZHX50.0A0A2K1ZHX5_POPTR; Uncharacterized protein
STRINGPOPTR_0008s15590.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26193375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.11e-169TESMIN/TSO1-like CXC 2