PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0345s0140.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family G2-like
Protein Properties Length: 268aa    MW: 30465.7 Da    PI: 6.5085
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0345s0140.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like103.71.1e-323084155
                 G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                            kprlrWt eLHerFv+av+ LGG++kAtPk+i+++m+vkgLtl+h+kSHLQk+Rl
  SapurV1A.0345s0140.1.p 30 KPRLRWTLELHERFVDAVTLLGGPDKATPKAIMRIMGVKGLTLYHLKSHLQKFRL 84
                            79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.7342787IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.7E-312785IPR009057Homeodomain-like
SuperFamilySSF466892.15E-162985IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-233085IPR006447Myb domain, plants
PfamPF002491.6E-73282IPR001005SANT/Myb domain
PfamPF143793.4E-16124170IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MPSALMQTHD REPPCFQRES GHLLITTDPK PRLRWTLELH ERFVDAVTLL GGPDKATPKA  60
IMRIMGVKGL TLYHLKSHLQ KFRLGKQPQN YLNEQAIRDA TDHLKNLQDA ATARIFSDGL  120
DKNMHQNEVL RTQIQAQGTL DEQLKVKHHL QKRIDAQRKY IQTILENAYR TVSAENRLFD  180
DQRVVSEMGS MKEIFSASNF PPIYDLDHSH DGFLPADDSM SSCTIPMISY DDMQLQQIGT  240
LAPCLASEEE LHQMITIDGC TLKASWD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A4e-203086258Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B4e-203086258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A4e-203086258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C4e-203086258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D4e-203086258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F4e-203086258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H4e-203086258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J4e-203086258Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development. Regulates the expression of the transcription factor NAC045 (AC A4VCM0). May activate the transcription of specific genes involved in phosphate uptake or assimilation (PubMed:15592750). Promotes flowering through transcriptional activation of both FT and its transport machinery component, FTIP1 (PubMed:26239308). {ECO:0000269|PubMed:14614507, ECO:0000269|PubMed:18523061, ECO:0000269|PubMed:25081480, ECO:0000269|PubMed:26239308, ECO:0000305|PubMed:15592750}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0345s0140.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by phosphate deficiency. {ECO:0000269|PubMed:15592750}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002316598.11e-174myb family transcription factor APL
RefseqXP_011000670.11e-174PREDICTED: myb family transcription factor APL-like
SwissprotQ9SAK51e-53APL_ARATH; Myb family transcription factor APL
TrEMBLB9HZJ61e-173B9HZJ6_POPTR; Uncharacterized protein
STRINGPOPTR_0011s00680.11e-173(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2812733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79430.24e-56G2-like family protein
Publications ? help Back to Top
  1. Martínez-Navarro AC,Galván-Gordillo SV,Xoconostle-Cázares B,Ruiz-Medrano R
    Vascular gene expression: a hypothesis.
    Front Plant Sci, 2013. 4: p. 261
    [PMID:23882276]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kondo Y, et al.
    Vascular Cell Induction Culture System Using Arabidopsis Leaves (VISUAL) Reveals the Sequential Differentiation of Sieve Element-Like Cells.
    Plant Cell, 2016. 28(6): p. 1250-62
    [PMID:27194709]
  4. Shibuta M,Abe M
    FE Controls the Transcription of Downstream Flowering Regulators Through Two Distinct Mechanisms in Leaf Phloem Companion Cells.
    Plant Cell Physiol., 2017. 58(11): p. 2017-2025
    [PMID:29036620]