PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0340s0160.3.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ARF
Protein Properties Length: 787aa    MW: 88568.5 Da    PI: 6.6143
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0340s0160.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.16.8e-23139240199
                             EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                             f+k lt sd++++g +++ k++a+e+      +++++  ++l+ +d++g++W++++i+r++++r++l++GW+ Fv+a++L +gD ++
  SapurV1A.0340s0160.3.p 139 FCKMLTASDTSTHGGFSVLKRHADEClppldmSLQPPA-QELVAKDLHGNEWRFRHIFRGQPKRHLLQSGWSLFVSAKKLVAGDAFI 224
                             89*****************************9666665.59********************************************** PP

                             EEE-SSSEE..EEEEE-S CS
                      B3  82 Fkldgrsefelvvkvfrk 99 
                             F   + +++el+v+v+r+
  SapurV1A.0340s0160.3.p 225 FL--RGDTEELRVGVRRA 240
                             **..3378888****985 PP
2Auxin_resp115.64.3e-38265347183
              Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                             a+ha+st+s+F+v+Y+Pr s++eF+++++k+++++k+++ +GmRfkm+fe e++ e+rlsGtv+gv+++dp +Wp+SkWr+Lk
  SapurV1A.0340s0160.3.p 265 AWHAVSTGSMFTVYYKPRNSPAEFIIPIDKYRESVKINYDIGMRFKMKFEAEEATEQRLSGTVTGVEEVDPKKWPRSKWRCLK 347
                             89*******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-38133254IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.71E-39133268IPR015300DNA-binding pseudobarrel domain
CDDcd100173.48E-20137239No hitNo description
PfamPF023627.3E-21139240IPR003340B3 DNA binding domain
SMARTSM010197.3E-21139241IPR003340B3 DNA binding domain
PROSITE profilePS5086311.561139241IPR003340B3 DNA binding domain
PfamPF065071.3E-34265347IPR010525Auxin response factor
PfamPF023093.6E-10659753IPR033389AUX/IAA domain
SuperFamilySSF542771.18E-11660739No hitNo description
PROSITE profilePS5174524.719662744IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 787 aa     Download sequence    Send to blast
MNNGSYSVDT KPNGIAGGSW SSPVAGEGSE DALYKELWHA CAGPLVTVPR QGELVYYFPQ  60
GHIEQVEAST NQVADDQQMP SYNLPPKILC RVVNVQLKAE LDTDEVFAQV ILLPEAHQDV  120
DLVEEDLPPP PARPRVHSFC KMLTASDTST HGGFSVLKRH ADECLPPLDM SLQPPAQELV  180
AKDLHGNEWR FRHIFRGQPK RHLLQSGWSL FVSAKKLVAG DAFIFLRGDT EELRVGVRRA  240
LSQPSNVPSS VISSHSMHIG ILATAWHAVS TGSMFTVYYK PRNSPAEFII PIDKYRESVK  300
INYDIGMRFK MKFEAEEATE QRLSGTVTGV EEVDPKKWPR SKWRCLKVRW DETSPVHRPE  360
RVSPWRIEPA LAPSLDPVPG CRSKRHRSNM ATPSADSSAP PKKDNEPSRH LQHQEIMTLR  420
NMYDGKNYSD GNHNHAWALS QGKDQTTFDN RKFGPDDKIP QVWHGSRLMN PTTGPGTLRE  480
SYESTHPFFE LNSDDIDHPS KLNGTGVFNC HSAPLMYSDH SFNMMASRME VHLEKDKDIQ  540
QQRGSWFSPF RNADNSSKPQ HLPFQQRNGE TSKDGNCKLF GFSLFGNPVA VEPAIINRHS  600
TDKQQQQINV ASDHLQLLGS EGFLEQVKHP KHARCEEQGN IFQASALHSK VVQGMPKGDS  660
TRRCVKVYKQ GTAVGRSLDL AKLNGYNELT AELDQIFEFH GELVAPYKDW LIVFTDDEGD  720
MMLVGDDPWQ EFCSMVRRIF VFTREEINRM EPRSLNLEAR GDSRSTDQMV DSMEDGTSNH  780
LQAVSP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-164153691354Auxin response factor 1
4ldw_A1e-164153691354Auxin response factor 1
4ldw_B1e-164153691354Auxin response factor 1
4ldx_A1e-164153691354Auxin response factor 1
4ldx_B1e-164153691354Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Functions independently of ethylene and cytokinin response pathways. May act as a repressor of cell division and organ growth. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:15960614, ECO:0000269|PubMed:16176952, ECO:0000269|PubMed:16339187}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0340s0160.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2084824e-72AC208482.1 Populus trichocarpa clone JGIACSB13-H05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002299344.20.0auxin response factor 2B isoform X1
RefseqXP_024445165.10.0auxin response factor 2B isoform X1
SwissprotQ94JM30.0ARFB_ARATH; Auxin response factor 2
TrEMBLB9GMS50.0B9GMS5_POPTR; Auxin response factor
STRINGPOPTR_0001s13110.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.40.0auxin response factor 2
Publications ? help Back to Top
  1. Chao WS,Doğramaci M,Foley ME,Horvath DP,Anderson JV
    Selection and validation of endogenous reference genes for qRT-PCR analysis in leafy spurge (Euphorbia esula).
    PLoS ONE, 2012. 7(8): p. e42839
    [PMID:22916167]
  2. Ozerova LV,Krasnikova MS,Troitsky AV,Solovyev AG,Morozov SY
    TAS3 Genes for small ta-siARF RNAs in plants belonging to subtribe Senecioninae: occurrence of prematurely terminated RNA precursors.
    Mol. Gen. Mikrobiol. Virusol., 2013.
    [PMID:24003511]
  3. Li C, et al.
    Ectopic expression of a maize hybrid down-regulated gene ZmARF25 decreases organ size by affecting cellular proliferation in Arabidopsis.
    PLoS ONE, 2014. 9(4): p. e94830
    [PMID:24756087]
  4. Lyons R, et al.
    Fusarium oxysporum triggers tissue-specific transcriptional reprogramming in Arabidopsis thaliana.
    PLoS ONE, 2015. 10(4): p. e0121902
    [PMID:25849296]
  5. Roodbarkelari F,Du F,Truernit E,Laux T
    ZLL/AGO10 maintains shoot meristem stem cells during Arabidopsis embryogenesis by down-regulating ARF2-mediated auxin response.
    BMC Biol., 2015. 13: p. 74
    [PMID:26358077]
  6. Meng LS,Wang ZB,Yao SQ,Liu A
    The ARF2-ANT-COR15A gene cascade regulates ABA-signaling-mediated resistance of large seeds to drought in Arabidopsis.
    J. Cell. Sci., 2015. 128(21): p. 3922-32
    [PMID:26395398]
  7. Zhao S,Zhang ML,Ma TL,Wang Y
    Phosphorylation of ARF2 Relieves Its Repression of Transcription of the K+ Transporter Gene HAK5 in Response to Low Potassium Stress.
    Plant Cell, 2016. 28(12): p. 3005-3019
    [PMID:27895227]
  8. Promchuea S,Zhu Y,Chen Z,Zhang J,Gong Z
    ARF2 coordinates with PLETHORAs and PINs to orchestrate ABA-mediated root meristem activity in Arabidopsis .
    J Integr Plant Biol, 2017. 59(1): p. 30-43
    [PMID:28074634]
  9. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  10. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]
  11. Zhang M,Hu X,Zhu M,Xu M,Wang L
    Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis.
    Sci Rep, 2017. 7(1): p. 1395
    [PMID:28469131]
  12. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]
  13. Liu Z, et al.
    ARF2-ARF4 and ARF5 are Essential for Female and Male Gametophyte Development in Arabidopsis.
    Plant Cell Physiol., 2018. 59(1): p. 179-189
    [PMID:29145642]
  14. Sarkar Das S, et al.
    Expression dynamics of miRNAs and their targets in seed germination conditions reveals miRNA-ta-siRNA crosstalk as regulator of seed germination.
    Sci Rep, 2018. 8(1): p. 1233
    [PMID:29352229]