PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0338s0300.8.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | WRKY | ||||||||
Protein Properties | Length: 710aa MW: 77014 Da PI: 6.1846 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 101.6 | 4.6e-32 | 294 | 350 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers+ +++++ei+Y+g Hnh SapurV1A.0338s0300.8.p 294 EDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSH-EGHITEIIYKGVHNHL 350 7****************************************.***************5 PP | |||||||
2 | WRKY | 101.1 | 6.7e-32 | 505 | 563 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+ver+ +d k v++tYeg+Hnh+ SapurV1A.0338s0300.8.p 505 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCTVRKHVERAWHDLKSVITTYEGKHNHD 563 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 22.561 | 288 | 352 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.7E-28 | 291 | 352 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.22E-25 | 291 | 352 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.8E-36 | 293 | 351 | IPR003657 | WRKY domain |
Pfam | PF03106 | 9.0E-25 | 294 | 349 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 3.3E-36 | 490 | 565 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.62E-28 | 497 | 565 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 38.067 | 500 | 565 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.6E-37 | 505 | 564 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.2E-24 | 506 | 563 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0030010 | Biological Process | establishment of cell polarity | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 710 aa Download sequence Send to blast |
MVGIDDNVAI IGDWVPPSPS PRAFFSTMLG DNINSRTIPE SPGEKRNEGL FLGQLEQMTS 60 ENADKMDGAQ TSGVQLTDLG TFSEQKSNFR GGLVERMAAR AGFNAPRLNT ESIRPTESSM 120 NPEIRSPYLT IPPGLSPTTL LESPVFLSNL AQPSPTTGKF SFFPNGNIKN STVGSDPPDK 180 SKETFFDTTD SSSFAFKPMG ESGSSFFLGG TSKLHGVEPA KAQFESRNTL HFQTELSKLT 240 TDKDSGGITV ADKRIFDTVD GRPEHSSPLD EQQDEDGDQR ASGESMAAGG TPSEDGYNWR 300 KYGQKQVKGS EYPRSYYKCT HPNCPVKKKV ERSHEGHITE IIYKGVHNHL KPPPNWRSAT 360 GSMDTQLDIP EQGWPQIGAV NDSGWAGTQK GTAAGTSDWR NDNVEVTSSA SGGLGPEFGN 420 PSSSVQGQSR TPFESADAVD ASSTLSNDED NDRATHGSVG YDGEGEESES KRRKVETYAT 480 EMSGATRAIR EPRVVVQTTS EVDILDDGYR WRKYGQKVVK GNPNPRSYYK CTSAGCTVRK 540 HVERAWHDLK SVITTYEGKH NHDVPAARNS NHVNSGTSNA TPAQAGIPVQ TQVHRPEASQ 600 VHNSMTSRFE RPPAFGSFMQ QLGSSAGFSF GMNQPGFANM GMAGLGSGQP KMPVIPIHPY 660 FAQQRAVNEM GLMMPKGEAK VEPVAEANMN LSSNNPSVYQ QIMSRLPQM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 4e-36 | 294 | 566 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 4e-36 | 294 | 566 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00071 | PBM | Transfer from AT5G56270 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0338s0300.8.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN117933 | 0.0 | JN117933.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor (WRKY37) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024437144.1 | 0.0 | probable WRKY transcription factor 2 isoform X2 | ||||
Swissprot | Q9FG77 | 0.0 | WRKY2_ARATH; Probable WRKY transcription factor 2 | ||||
TrEMBL | U5G0P4 | 0.0 | U5G0P4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0011s17230.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56270.1 | 0.0 | WRKY DNA-binding protein 2 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0338s0300.8.p |
Publications ? help Back to Top | |||
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