PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0338s0300.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | WRKY | ||||||||
Protein Properties | Length: 735aa MW: 79631.9 Da PI: 6.1538 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 101.5 | 4.8e-32 | 319 | 375 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers+ +++++ei+Y+g Hnh SapurV1A.0338s0300.4.p 319 EDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSH-EGHITEIIYKGVHNHL 375 7****************************************.***************5 PP | |||||||
2 | WRKY | 101 | 7e-32 | 530 | 588 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+ver+ +d k v++tYeg+Hnh+ SapurV1A.0338s0300.4.p 530 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCTVRKHVERAWHDLKSVITTYEGKHNHD 588 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 22.561 | 313 | 377 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.35E-25 | 316 | 377 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.8E-28 | 316 | 377 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.8E-36 | 318 | 376 | IPR003657 | WRKY domain |
Pfam | PF03106 | 9.4E-25 | 319 | 374 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 3.5E-36 | 515 | 590 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.75E-28 | 522 | 590 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 38.067 | 525 | 590 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.6E-37 | 530 | 589 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.4E-24 | 531 | 588 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0030010 | Biological Process | establishment of cell polarity | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 735 aa Download sequence Send to blast |
MVGIDDNVAI IGDWVPPSPS PRAFFSTMLG DNINSRTIPE SPGEKRNEGL FLGQLEQMTS 60 ENADKMDGAQ TSGVQLTDLG TFSEQKSNFR GGLVERMAAR AGFNAPRLNT ESIRPTESSM 120 NPEIRSPYLT IPPGLSPTTL LESPVFLSNL AQPSPTTGKF SFFPNGNIKN STVGSDPPDK 180 SKETFFDTTD SSSFAFKPMG ESGSSFFLGG TSKIASATFP QQSFPSIDVS VHSGNAFQLH 240 GVEPAKAQFE SRNTLHFQTE LSKLTTDKDS GGITVADKRI FDTVDGRPEH SSPLDEQQDE 300 DGDQRASGES MAAGGTPSED GYNWRKYGQK QVKGSEYPRS YYKCTHPNCP VKKKVERSHE 360 GHITEIIYKG VHNHLKPPPN WRSATGSMDT QLDIPEQGWP QIGAVNDSGW AGTQKGTAAG 420 TSDWRNDNVE VTSSASGGLG PEFGNPSSSV QGQSRTPFES ADAVDASSTL SNDEDNDRAT 480 HGSVGYDGEG EESESKRRKV ETYATEMSGA TRAIREPRVV VQTTSEVDIL DDGYRWRKYG 540 QKVVKGNPNP RSYYKCTSAG CTVRKHVERA WHDLKSVITT YEGKHNHDVP AARNSNHVNS 600 GTSNATPAQA GIPVQTQVHR PEASQVHNSM TSRFERPPAF GSFMQQLGSS AGFSFGMNQP 660 GFANMGMAGL GSGQPKMPVI PIHPYFAQQR AVNEMGLMMP KGEAKVEPVA EANMNLSSNN 720 PSVYQQIMSR LPQM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 5e-36 | 319 | 591 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 5e-36 | 319 | 591 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00071 | PBM | Transfer from AT5G56270 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0338s0300.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN117933 | 0.0 | JN117933.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor (WRKY37) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006378014.1 | 0.0 | probable WRKY transcription factor 2 isoform X1 | ||||
Refseq | XP_024437142.1 | 0.0 | probable WRKY transcription factor 2 isoform X1 | ||||
Refseq | XP_024437143.1 | 0.0 | probable WRKY transcription factor 2 isoform X1 | ||||
Swissprot | Q9FG77 | 0.0 | WRKY2_ARATH; Probable WRKY transcription factor 2 | ||||
TrEMBL | U5G0P4 | 0.0 | U5G0P4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0011s17230.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56270.1 | 0.0 | WRKY DNA-binding protein 2 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0338s0300.4.p |
Publications ? help Back to Top | |||
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