PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0338s0300.12.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family WRKY
Protein Properties Length: 557aa    MW: 60411.1 Da    PI: 4.974
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0338s0300.12.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1023.4e-32319375259
                              --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              +DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers+ +++++ei+Y+g Hnh 
  SapurV1A.0338s0300.12.p 319 EDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSH-EGHITEIIYKGVHNHL 375
                              7****************************************.***************5 PP
2WRKY352.9e-11530551122
                              ---SS-EEEEEEE--TT-SS-E CS
                     WRKY   1 ldDgynWrKYGqKevkgsefpr 22 
                              ldDgy+WrKYGqK+vkg+++pr
  SapurV1A.0338s0300.12.p 530 LDDGYRWRKYGQKVVKGNPNPR 551
                              59*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.561313377IPR003657WRKY domain
SuperFamilySSF1182901.57E-25316377IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.9E-28316377IPR003657WRKY domain
SMARTSM007744.8E-36318376IPR003657WRKY domain
PfamPF031066.5E-25319374IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.8E-14515551IPR003657WRKY domain
SuperFamilySSF1182901.28E-9522552IPR003657WRKY domain
PROSITE profilePS5081115.686525551IPR003657WRKY domain
SMARTSM007740.0029530556IPR003657WRKY domain
PfamPF031068.3E-7531551IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009942Biological Processlongitudinal axis specification
GO:0030010Biological Processestablishment of cell polarity
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MVGIDDNVAI IGDWVPPSPS PRAFFSTMLG DNINSRTIPE SPGEKRNEGL FLGQLEQMTS  60
ENADKMDGAQ TSGVQLTDLG TFSEQKSNFR GGLVERMAAR AGFNAPRLNT ESIRPTESSM  120
NPEIRSPYLT IPPGLSPTTL LESPVFLSNL AQPSPTTGKF SFFPNGNIKN STVGSDPPDK  180
SKETFFDTTD SSSFAFKPMG ESGSSFFLGG TSKIASATFP QQSFPSIDVS VHSGNAFQLH  240
GVEPAKAQFE SRNTLHFQTE LSKLTTDKDS GGITVADKRI FDTVDGRPEH SSPLDEQQDE  300
DGDQRASGES MAAGGTPSED GYNWRKYGQK QVKGSEYPRS YYKCTHPNCP VKKKVERSHE  360
GHITEIIYKG VHNHLKPPPN WRSATGSMDT QLDIPEQGWP QIGAVNDSGW AGTQKGTAAG  420
TSDWRNDNVE VTSSASGGLG PEFGNPSSSV QGQSRTPFES ADAVDASSTL SNDEDNDRAT  480
HGSVGYDGEG EESESKRRKV ETYATEMSGA TRAIREPRVV VQTTSEVDIL DDGYRWRKYG  540
QKVVKGNPNP RWLNQH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-183203781675WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00071PBMTransfer from AT5G56270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0338s0300.12.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN1179330.0JN117933.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor (WRKY37) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006378014.10.0probable WRKY transcription factor 2 isoform X1
RefseqXP_024437142.10.0probable WRKY transcription factor 2 isoform X1
RefseqXP_024437143.10.0probable WRKY transcription factor 2 isoform X1
SwissprotQ9FG771e-142WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLU5G0P40.0U5G0P4_POPTR; Uncharacterized protein
STRINGPOPTR_0011s17230.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-139WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  4. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]