PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0336s0110.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | LBD | ||||||||
Protein Properties | Length: 232aa MW: 25172.5 Da PI: 6.75 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 99.6 | 3.1e-31 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilk 82 +C++C+vlr++C++dC+l+p++ p++q +++ +v+k+FG++ ++++++++pe++r+ +++sl++eA+ r+ +Pv+Gavg++++ SapurV1A.0336s0110.1.p 2 SCNGCRVLRKGCSEDCILRPCLqwiesPEAQGHATVFVAKFFGRAGLMSFISSVPESQRPSLFQSLLFEACGRTVNPVNGAVGLLWA 88 6************************************************************************************** PP DUF260 83 lqqqleqlkaelall 97 +++++q+++e++l+ SapurV1A.0336s0110.1.p 89 RNWHVCQAAVETVLR 103 *********998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 19.911 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.8E-27 | 2 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006807 | Biological Process | nitrogen compound metabolic process | ||||
GO:0060776 | Biological Process | simple leaf morphogenesis |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MSCNGCRVLR KGCSEDCILR PCLQWIESPE AQGHATVFVA KFFGRAGLMS FISSVPESQR 60 PSLFQSLLFE ACGRTVNPVN GAVGLLWARN WHVCQAAVET VLRGGTLSPM PDFLTDGRSP 120 ASDEASEFEV ACSDIWKLKD PNPAHHSRSR VSPKRKRKEE PVVVNTQHND LDLLLTPSIS 180 QKGLAESCRP GTPSMNSEES VTTNTTCFDC AGYGDHYGNG GGETKLLNLF P* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 152 | 158 | PKRKRKE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0336s0110.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF148830 | 1e-164 | EF148830.1 Populus trichocarpa x Populus deltoides clone WS0138_O01 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002306497.1 | 1e-141 | LOB domain-containing protein 37 | ||||
Swissprot | Q9FN11 | 6e-85 | LBD37_ARATH; LOB domain-containing protein 37 | ||||
TrEMBL | B9H6M3 | 1e-139 | B9H6M3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s18900.1 | 1e-140 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF721 | 34 | 136 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49940.1 | 1e-80 | LOB domain-containing protein 38 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0336s0110.1.p |
Publications ? help Back to Top | |||
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