PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0329s0040.8.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family SBP
Protein Properties Length: 374aa    MW: 40894.2 Da    PI: 8.7401
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0329s0040.8.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.71.1e-40883277
                            -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                     SBP  2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77
                            Cqv +C++dls+ k+yh+rhkvCevhsk+++v+v+g+e+rfCqqCsrfh lsefD++krsCr+rLa+hne rrk+q
  SapurV1A.0329s0040.8.p  8 CQVYDCNKDLSSSKQYHKRHKVCEVHSKTAKVIVNGIEKRFCQQCSRFHLLSEFDDSKRSCRKRLAGHNEWRRKPQ 83
                            **************************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.1E-31369IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.077582IPR004333Transcription factor, SBP-box
SuperFamilySSF1036127.95E-38685IPR004333Transcription factor, SBP-box
PfamPF031102.2E-30881IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MNSHTAYCQV YDCNKDLSSS KQYHKRHKVC EVHSKTAKVI VNGIEKRFCQ QCSRFHLLSE  60
FDDSKRSCRK RLAGHNEWRR KPQAGLQSGR TGRLFHSYSG FSSSRTHGNA LTTASFICQD  120
VLQSGLSHPN KYGANGWCKR VKIEDGTGSP PSSIPITNAY LHSKSLFPSN NFEKIFPTFH  180
EVGANTASGS ILNESTDRYQ DVMGGKTSSS HSFLQDTSLV NNELTAFDAA STIQELSGTT  240
TSGCAHSLLS SQSQNSSSHS SGIPMYHQLI VSCRNTGNSM DQIIGASSQA SSSEVPNKFP  300
SWVTSSVKGS HLGPLLISGN SHVVNFDVTD GVYHGSHFLN ARDHLGSEDD TTTDLLQLPS  360
QPQRVQQCKQ NRK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-298811184squamosa promoter binding protein-like 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0329s0040.8.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006374432.10.0squamosa promoter-binding-like protein 18
TrEMBLA0A385JIN00.0A0A385JIN0_POPTO; Squamosa promoter-binding protein-like
TrEMBLA0A3N7GZ770.0A0A3N7GZ77_POPTR; Uncharacterized protein
TrEMBLU5FPU60.0U5FPU6_POPTR; Uncharacterized protein
STRINGPOPTR_0015s07140.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.13e-40SBP family protein