PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0329s0040.7.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | SBP | ||||||||
Protein Properties | Length: 374aa MW: 40894.2 Da PI: 8.7401 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 129.7 | 1.1e-40 | 8 | 83 | 2 | 77 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqv +C++dls+ k+yh+rhkvCevhsk+++v+v+g+e+rfCqqCsrfh lsefD++krsCr+rLa+hne rrk+q SapurV1A.0329s0040.7.p 8 CQVYDCNKDLSSSKQYHKRHKVCEVHSKTAKVIVNGIEKRFCQQCSRFHLLSEFDDSKRSCRKRLAGHNEWRRKPQ 83 **************************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.1E-31 | 3 | 69 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.077 | 5 | 82 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 7.95E-38 | 6 | 85 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.2E-30 | 8 | 81 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 374 aa Download sequence Send to blast |
MNSHTAYCQV YDCNKDLSSS KQYHKRHKVC EVHSKTAKVI VNGIEKRFCQ QCSRFHLLSE 60 FDDSKRSCRK RLAGHNEWRR KPQAGLQSGR TGRLFHSYSG FSSSRTHGNA LTTASFICQD 120 VLQSGLSHPN KYGANGWCKR VKIEDGTGSP PSSIPITNAY LHSKSLFPSN NFEKIFPTFH 180 EVGANTASGS ILNESTDRYQ DVMGGKTSSS HSFLQDTSLV NNELTAFDAA STIQELSGTT 240 TSGCAHSLLS SQSQNSSSHS SGIPMYHQLI VSCRNTGNSM DQIIGASSQA SSSEVPNKFP 300 SWVTSSVKGS HLGPLLISGN SHVVNFDVTD GVYHGSHFLN ARDHLGSEDD TTTDLLQLPS 360 QPQRVQQCKQ NRK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 3e-29 | 8 | 81 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0329s0040.7.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006374432.1 | 0.0 | squamosa promoter-binding-like protein 18 | ||||
TrEMBL | A0A385JIN0 | 0.0 | A0A385JIN0_POPTO; Squamosa promoter-binding protein-like | ||||
TrEMBL | A0A3N7GZ77 | 0.0 | A0A3N7GZ77_POPTR; Uncharacterized protein | ||||
TrEMBL | U5FPU6 | 0.0 | U5FPU6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0015s07140.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69170.1 | 3e-40 | SBP family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0329s0040.7.p |