PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0329s0040.6.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | SBP | ||||||||
Protein Properties | Length: 447aa MW: 48907.2 Da PI: 8.597 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 129.3 | 1.4e-40 | 81 | 156 | 2 | 77 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqv +C++dls+ k+yh+rhkvCevhsk+++v+v+g+e+rfCqqCsrfh lsefD++krsCr+rLa+hne rrk+q SapurV1A.0329s0040.6.p 81 CQVYDCNKDLSSSKQYHKRHKVCEVHSKTAKVIVNGIEKRFCQQCSRFHLLSEFDDSKRSCRKRLAGHNEWRRKPQ 156 **************************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 6.5E-32 | 75 | 142 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.077 | 78 | 155 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.44E-37 | 79 | 158 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 3.0E-30 | 81 | 154 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 447 aa Download sequence Send to blast |
MVTPNSFTLE DESTSRLSST VMESDCRVSA FIDLNLGRFG DPRDVQNCRR ISKSASIVFP 60 SESSAPPRSY RAGMNSHTAY CQVYDCNKDL SSSKQYHKRH KVCEVHSKTA KVIVNGIEKR 120 FCQQCSRFHL LSEFDDSKRS CRKRLAGHNE WRRKPQAGLQ SGRTGRLFHS YSGFSSSRTH 180 GNALTTASFI CQDVLQSGLS HPNKYGANGW CKRVKIEDGT GSPPSSIPIT NAYLHSKSLF 240 PSNNFEKIFP TFHEVGANTA SGSILNESTD RYQDVMGGKT SSSHSFLQDT SLVNNELTAF 300 DAASTIQELS GTTTSGCAHS LLSSQSQNSS SHSSGIPMYH QLIVSCRNTG NSMDQIIGAS 360 SQASSSEVPN KFPSWVTSSV KGSHLGPLLI SGNSHVVNFD VTDGVYHGSH FLNARDHLGS 420 EDDTTTDLLQ LPSQPQRVQQ CKQNRK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 8e-29 | 81 | 154 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0329s0040.6.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006374432.1 | 0.0 | squamosa promoter-binding-like protein 18 | ||||
TrEMBL | A0A385JIN0 | 0.0 | A0A385JIN0_POPTO; Squamosa promoter-binding protein-like | ||||
TrEMBL | U5FPU6 | 0.0 | U5FPU6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0015s07140.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69170.1 | 4e-40 | SBP family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0329s0040.6.p |