PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0329s0040.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | SBP | ||||||||
Protein Properties | Length: 542aa MW: 59318.8 Da PI: 8.5259 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 128.9 | 1.9e-40 | 176 | 251 | 2 | 77 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqv +C++dls+ k+yh+rhkvCevhsk+++v+v+g+e+rfCqqCsrfh lsefD++krsCr+rLa+hne rrk+q SapurV1A.0329s0040.2.p 176 CQVYDCNKDLSSSKQYHKRHKVCEVHSKTAKVIVNGIEKRFCQQCSRFHLLSEFDDSKRSCRKRLAGHNEWRRKPQ 251 **************************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 8.7E-32 | 170 | 237 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.077 | 173 | 250 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.96E-37 | 174 | 253 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 4.0E-30 | 176 | 249 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 542 aa Download sequence Send to blast |
MESGSYVLGG KGHVSIGATS SSDIFSRSKY VLMSCNLKNQ SNFEYDCLVS GSQAIENGAR 60 RELGYQQLIE KHEPDTSIRD ALTSKVSCRK NTNSFMVTPN SFTLEDESTS RLSSTVMESD 120 CRVSAFIDLN LGRFGDPRDV QNCRRISKSA SIVFPSESSA PPRSYRAGMN SHTAYCQVYD 180 CNKDLSSSKQ YHKRHKVCEV HSKTAKVIVN GIEKRFCQQC SRFHLLSEFD DSKRSCRKRL 240 AGHNEWRRKP QAGLQSGRTG RLFHSYSGFS SSRTHGNALT TASFICQDVL QSGLSHPNKY 300 GANGWCKRVK IEDGTGSPPS SIPITNAYLH SKSLFPSNNF EKIFPTFHEV GANTASGSIL 360 NESTDRYQDV MGGKTSSSHS FLQDTSLVNN ELTAFDAAST IQELSGTTTS GCAHSLLSSQ 420 SQNSSSHSSG IPMYHQLIVS CRNTGNSMDQ IIGASSQASS SEVPNKFPSW VTSSVKGSHL 480 GPLLISGNSH VVNFDVTDGV YHGSHFLNAR DHLGSEDDTT TDLLQLPSQP QRVQQCKQNR 540 K* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-28 | 176 | 249 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0329s0040.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006374432.1 | 0.0 | squamosa promoter-binding-like protein 18 | ||||
TrEMBL | A0A385JIN0 | 0.0 | A0A385JIN0_POPTO; Squamosa promoter-binding protein-like | ||||
TrEMBL | U5FPU6 | 0.0 | U5FPU6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0015s07140.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69170.1 | 1e-39 | SBP family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0329s0040.2.p |