PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0326s0130.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | GRF | ||||||||
Protein Properties | Length: 475aa MW: 52350.3 Da PI: 7.8582 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 76.6 | 2.4e-24 | 175 | 217 | 2 | 44 |
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 epgrCrRtDGKkWRCsr+v +++k+CErH+hrgr rsrk++e SapurV1A.0326s0130.1.p 175 LEPGRCRRTDGKKWRCSREVAPDQKYCERHMHRGRPRSRKHVE 217 69***************************************97 PP | |||||||
2 | QLQ | 49.5 | 1.3e-17 | 125 | 156 | 2 | 33 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlq 33 +FT+aQ+ +L++Q+++yKy++++ vPp+Ll SapurV1A.0326s0130.1.p 125 PFTNAQWKELERQAMIYKYMVSSIHVPPHLLI 156 8*****************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 2.4E-8 | 124 | 160 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 9.9E-12 | 125 | 157 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 18.593 | 125 | 160 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.596 | 174 | 218 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.6E-20 | 176 | 217 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 475 aa Download sequence Send to blast |
MRINYGFDVP NKAAKERKMT SDVDFGVKLR QPIDHHQSFP FSRTPMMVLH ANQHRPFDNG 60 PTSSCDGNKP LINYSGDHIY SGGACCAAVG VRTLQPFETS ETTTTTTASA FKSPGGNMAA 120 SLGFPFTNAQ WKELERQAMI YKYMVSSIHV PPHLLIPPPI MGNGLDVGFT NRADLEPGRC 180 RRTDGKKWRC SREVAPDQKY CERHMHRGRP RSRKHVELNS SNKKSRNNPA ICTEFPVTAA 240 ISNSTIKDNH SGSASDEQFV RTTMPQPYIQ APVSVNKSSE KISTFDVDRT FGSTYREPRS 300 SDWMLEGGTV PIVTNDQQWP HLVRTKIGIA IEGSLNDASV LKQHYREESL NLNSFGNFNA 360 RENQHSNQNS LFLDESPSGF IDAWSTDANS GNTSSVSSDG KLPLSHLSLS MGGNRSIDDE 420 MGQIQMNLGL IGQYQNQECG GDTSSTPGGP LAEVLQLRTV NINTGTNHQS PFHN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0326s0130.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002321965.2 | 0.0 | growth-regulating factor 4 | ||||
TrEMBL | A0A3N7G355 | 0.0 | A0A3N7G355_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0015s00860.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7324 | 28 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53660.1 | 3e-32 | growth-regulating factor 7 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0326s0130.1.p |