PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0325s0180.4.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

FAR1

Protein Properties

Length: 785aa MW: 91339.7 Da PI: 8.8524

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0325s0180.4.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	78.9	9.3e-25	98	207	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..................tekerrtraetrtgCkaklkvk 69 +fY+eYAk+vGFs+ +++s++s+ +g++++++fvC+++g+++++++ +++ r +++ ++t+C a+++vk SapurV1A.0325s0180.4.p 98 SFYKEYAKSVGFSTITKASRRSRISGKFIDAKFVCTRYGTKRDTSTIelpqpvsnadaatslpvkRKRGRINQSWSKTDCIACMHVK 184 5*************************************99988879**********998888899************ PP FAR1 70 kek.dgkwevtkleleHnHelap 91 +++ dg+w+v ++ eHnHe++p SapurV1A.0325s0180.4.p 185 RRQqDGRWVVRSFIREHNHEIFP 207 99****************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.0E-22	98	207	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.6E-33	326	418	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.361	605	641	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	9.2E-7	616	643	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	1.1E-6	617	639	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 785 aa Download sequence Send to blast
MGIDLEQPSR EYHKEDRRPN ENVNMVDGGG EGHERDQNIV NSPKISGNGC EKTRTVINER 60 VLYGRKKPNA GDGINLNSVK YAEPHDGMEF ESKDEAFSFY KEYAKSVGFS TITKASRRSR 120 ISGKFIDAKF VCTRYGTKRD TSTIELPQPV SNADAATSLP VKRKRGRINQ SWSKTDCIAC 180 MHVKRRQQDG RWVVRSFIRE HNHEIFPDQA YYYRGHRNLD LGNDNVDAMQ AIRARTKKLY 240 VAMSRQSGGH KKHENQKGGV TNPSGNTKHL ALDEGDAQAM LDHFMYMQDA NPNFFYAIDL 300 NEEQQLRNVF WVDAKGRLDY GSFGDVIFFD TTYLKNEYKL PFVPFIGVNH HFQFLLLGCA 360 LVADETKTTY VWLMRAWLRA MGGHAPRVIL TDQDNALKEA IQEVFPNSRH CFCLWHVFSK 420 IPEKLSYVMR QHENFMLKFK KCILKSWSSE QFEKRWWKMV EIFNLRNDVW FQSLYEDRQR 480 WIPVFMIDNC LAGMSTTQRS ESINTLFDRY MQRKTTLKEF LEQQKTMLQE KFEEEAKADF 540 ETWHKQPGLK SPSPFGKQMA SIYTHAIFKK FQVEVLGVVA CHPRKETEGE TQTFKVQDFE 600 DNQYFMVVWN EKTSYLSCSC RLFEFNGFLC RHVLIVMQMS GLHRIPSQYI LKRWTKDAKS 660 RQNMREQSDV VESRVQRYND LCKRAFKLGD EGSLSQESYN IAFNALEEAL RKCESVNNSI 720 QNIIEPTLPP SNGPLDYEEV NQAHGVSKTN KKKDITRKKQ VHPEPEVIPI RMHDSWQQMV 780 SDAV*

Sequence ? help Back to Top

Protein Sequence Length: 785 aa Download sequence Send to blast

MGIDLEQPSR EYHKEDRRPN ENVNMVDGGG EGHERDQNIV NSPKISGNGC EKTRTVINER  60
VLYGRKKPNA GDGINLNSVK YAEPHDGMEF ESKDEAFSFY KEYAKSVGFS TITKASRRSR  120
ISGKFIDAKF VCTRYGTKRD TSTIELPQPV SNADAATSLP VKRKRGRINQ SWSKTDCIAC  180
MHVKRRQQDG RWVVRSFIRE HNHEIFPDQA YYYRGHRNLD LGNDNVDAMQ AIRARTKKLY  240
VAMSRQSGGH KKHENQKGGV TNPSGNTKHL ALDEGDAQAM LDHFMYMQDA NPNFFYAIDL  300
NEEQQLRNVF WVDAKGRLDY GSFGDVIFFD TTYLKNEYKL PFVPFIGVNH HFQFLLLGCA  360
LVADETKTTY VWLMRAWLRA MGGHAPRVIL TDQDNALKEA IQEVFPNSRH CFCLWHVFSK  420
IPEKLSYVMR QHENFMLKFK KCILKSWSSE QFEKRWWKMV EIFNLRNDVW FQSLYEDRQR  480
WIPVFMIDNC LAGMSTTQRS ESINTLFDRY MQRKTTLKEF LEQQKTMLQE KFEEEAKADF  540
ETWHKQPGLK SPSPFGKQMA SIYTHAIFKK FQVEVLGVVA CHPRKETEGE TQTFKVQDFE  600
DNQYFMVVWN EKTSYLSCSC RLFEFNGFLC RHVLIVMQMS GLHRIPSQYI LKRWTKDAKS  660
RQNMREQSDV VESRVQRYND LCKRAFKLGD EGSLSQESYN IAFNALEEAL RKCESVNNSI  720
QNIIEPTLPP SNGPLDYEEV NQAHGVSKTN KKKDITRKKQ VHPEPEVIPI RMHDSWQQMV  780
SDAV*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:12753585, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:22634759}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0325s0180.4.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. {ECO:0000269\|PubMed:18033885}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006385723.2	0.0	protein FAR-RED IMPAIRED RESPONSE 1 isoform X1
Refseq	XP_024453592.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1 isoform X1
Refseq	XP_024453593.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1 isoform X1
Refseq	XP_024453594.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1 isoform X1
Refseq	XP_024453595.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1 isoform X1
Refseq	XP_024453596.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1 isoform X2
Swissprot	Q9SWG3	0.0	FAR1_ARATH; Protein FAR-RED IMPAIRED RESPONSE 1
TrEMBL	A0A2K2B580	0.0	A0A2K2B580_POPTR; Uncharacterized protein
TrEMBL	A0A2K2B585	0.0	A0A2K2B585_POPTR; Uncharacterized protein
STRING	POPTR_0003s10970.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	0.0	FAR1 family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0325s0180.4.p

Publications ? help Back to Top
Domergue F, et al. Three Arabidopsis fatty acyl-coenzyme A reductases, FAR1, FAR4, and FAR5, generate primary fatty alcohols associated with suberin deposition. Plant Physiol., 2010. 153(4): p. 1539-54 [PMID:20571114] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Wang C, et al. SCAB3 Is Required for Reorganization of Actin Filaments during Light Quality Changes. J Genet Genomics, 2015. 42(4): p. 161-8 [PMID:25953354] Wang W, et al. A pair of light signaling factors FHY3 and FAR1 regulates plant immunity by modulating chlorophyll biosynthesis. J Integr Plant Biol, 2016. 58(1): p. 91-103 [PMID:25989254] Ma L, et al. Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1. Mol Plant, 2016. 9(4): p. 541-57 [PMID:26714049] Siddiqui H,Khan S,Rhodes BM,Devlin PF FHY3 and FAR1 Act Downstream of Light Stable Phytochromes. Front Plant Sci, 2016. 7: p. 175 [PMID:26941752] Liu L,Li B,Liu X FAR-RED ELONGATED HYPOCOTYL3 promotes floral meristem determinacy in Arabidopsis. Plant Signal Behav, 2016. 11(10): p. e1238545 [PMID:27660915] Ma L,Xue N,Fu X,Zhang H,Li G Arabidopsis thaliana FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) modulate starch synthesis in response to light and sugar. New Phytol., 2017. 213(4): p. 1682-1696 [PMID:27859295] Liu Y, et al. Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1. Plant Cell, 2017. 29(9): p. 2269-2284 [PMID:28842534] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]