PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0325s0030.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | WRKY | ||||||||
Protein Properties | Length: 317aa MW: 35506.3 Da PI: 9.8194 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 99 | 2.9e-31 | 246 | 304 | 3 | 60 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 D ++WrKYGqK++kgs++prsYY+C+ + gCp++k+vers +dp ++++ YegeHnh+k SapurV1A.0325s0030.1.p 246 DDHSWRKYGQKPIKGSPYPRSYYKCSKRrGCPARKQVERSLDDPAMLVVAYEGEHNHSK 304 99*************************99****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 5.2E-15 | 202 | 242 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 1.1E-31 | 235 | 304 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.69 | 239 | 305 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.62E-26 | 242 | 303 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.6E-36 | 244 | 304 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.3E-27 | 246 | 302 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 317 aa Download sequence Send to blast |
MNTKEASAVC VSMTPRWDFK IHEVAQSSFR HANNLFSCIS DQNQKRSIQE VSLIAQDAVN 60 EFRNLDRILD DSAQSDCKRI RKGPLPHAHD INPVELMDSP NSVSESPGQN FSRPSRQLFP 120 PQSILSTSSF THVNSFNLYR EKQKKPKENV DVKNNLVMGL NLSPLQPNAC FLSLDGSGRI 180 IHHSSSEGLP SQDDSSLFSK SKSEETSAKC LASTGGCHCS KRRRLRIKKI IKVPALSTKL 240 ADIPPDDHSW RKYGQKPIKG SPYPRSYYKC SKRRGCPARK QVERSLDDPA MLVVAYEGEH 300 NHSKIAFQSP NMMLQI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-19 | 240 | 302 | 10 | 71 | WRKY transcription factor 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 220 | 224 | KRRRL |
2 | 223 | 232 | RLRIKKIIKV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0325s0030.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024452726.1 | 0.0 | probable WRKY transcription factor 17 | ||||
TrEMBL | A0A2K2B5B2 | 0.0 | A0A2K2B5B2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0003s11120.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14424 | 13 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31550.1 | 3e-45 | WRKY DNA-binding protein 11 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0325s0030.1.p |