PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SapurV1A.0323s0160.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 206aa MW: 23965.9 Da PI: 6.7924 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.4 | 6.9e-18 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ll ++v G g+W++++r g+ R++k+c++rw++yl SapurV1A.0323s0160.1.p 13 KGPWTPEEDKLLSEYVSVNGEGRWSSVSRFSGLSRSGKSCRLRWLNYL 60 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.2 | 2.9e-16 | 68 | 110 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 T++E+ +++++++++G++ W+tIar+++ gRt++++k++w+++ SapurV1A.0323s0160.1.p 68 QITPQEEGIIIELHALWGNK-WSTIARYLP-GRTDNEIKNYWRTH 110 569*****************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.247 | 8 | 64 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.02E-30 | 10 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.2E-15 | 12 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-16 | 13 | 60 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.0E-22 | 14 | 67 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.08E-10 | 15 | 60 | No hit | No description |
SMART | SM00717 | 2.4E-13 | 65 | 113 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.288 | 65 | 115 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-23 | 68 | 113 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.9E-14 | 69 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.83E-9 | 70 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 206 aa Download sequence Send to blast |
MMGRGVAEQG WRKGPWTPEE DKLLSEYVSV NGEGRWSSVS RFSGLSRSGK SCRLRWLNYL 60 RPGLKRSQIT PQEEGIIIEL HALWGNKWST IARYLPGRTD NEIKNYWRTH FKTKDKSSQK 120 QDQRKAQILK PEMQQHQQQL ESGEMKMENT IDDHFKMNEA EMFHNLEDQC WSAMSQDVAS 180 WADFVVEDCY GLWGGLWNLD DHPQG* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-24 | 13 | 114 | 7 | 107 | B-MYB |
1h8a_C | 1e-24 | 13 | 114 | 27 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00388 | DAP | Transfer from AT3G30210 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | SapurV1A.0323s0160.1.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}. | |||||
UniProt | INDUCTION: Isoform MYB59-1 is induced by jasmonate (JA), salicylic acid (SA), gibberellic acid (GA), and ethylene. Also induced by cadmium (Cd). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:16531467}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024454394.1 | 1e-121 | transcription factor MYB59-like | ||||
Swissprot | Q4JL84 | 1e-46 | MYB59_ARATH; Transcription factor MYB59 | ||||
Swissprot | Q9LX82 | 1e-46 | MYB48_ARATH; Transcription factor MYB48 | ||||
TrEMBL | A0A2K2AT89 | 1e-119 | A0A2K2AT89_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0004s11460.1 | 1e-109 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1182 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G30210.1 | 5e-58 | myb domain protein 121 |
Link Out ? help Back to Top | |
---|---|
Phytozome | SapurV1A.0323s0160.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|