PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0323s0010.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | TCP | ||||||||
Protein Properties | Length: 367aa MW: 40635.6 Da PI: 9.5253 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 101.9 | 1.1e-31 | 48 | 146 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.....eaesssssas 83 g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++ak++i+el+ ++ ++ ++ ++ss++ +s SapurV1A.0323s0010.2.p 48 FGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAKHEIDELPPLPIPPGIFSlnrqaMPGSSHEVGS 134 689*************************************************************77777444222121111111111 PP TCP 84 nsssg......k 89 ++ss+ + SapurV1A.0323s0010.2.p 135 SQSSKevfkmsN 146 111112222220 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.4E-29 | 50 | 177 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 31.469 | 50 | 108 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 367 aa Download sequence Send to blast |
MIPSSKQVGS PAKKEDNSND SKISKASSSS GTWLRLKDPR IVRVSRAFGG KDRHSKVCTI 60 RGLRDRRVRL SVPTAIQLYD LQDRLGLNQP SKVVDWLLNA AKHEIDELPP LPIPPGIFSL 120 NRQAMPGSSH EVGSSQSSKE VFKMSNSINW EDTSGFTRPG FWNADAILRA KSKEVAIDPV 180 NEKENWKKRD EEDKQDGNIE GNSAQVLSGG FFQRASHSSL PSLINNAMPY GSFFHLETPS 240 FPLSHMGNHG FAAQTGDIHN LNVLPFSSAL SLSSGSQILV CPPVTTQSYF PSHATPSMEI 300 DPRQINHFQW LTPSTQNHLP NSLTPSPYPI NQSMRPYSQY FSVTPRVLHS HNSESPPDKD 360 PLFPFK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 7e-18 | 55 | 109 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 7e-18 | 55 | 109 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0323s0010.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002305384.1 | 0.0 | transcription factor TCP13 isoform X1 | ||||
Refseq | XP_024449006.1 | 0.0 | transcription factor TCP13 isoform X1 | ||||
Refseq | XP_024454630.1 | 0.0 | transcription factor TCP13 isoform X1 | ||||
Refseq | XP_024454631.1 | 0.0 | transcription factor TCP13 isoform X1 | ||||
TrEMBL | B9H0G5 | 0.0 | B9H0G5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0004s11510.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02150.1 | 8e-39 | plastid transcription factor 1 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0323s0010.2.p |